View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_high_15 (Length: 273)
Name: NF11686_high_15
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 14288494 - 14288690
Alignment:
| Q |
77 |
tattcaacttgttacatgatgaaaaaggctcaacacggccatcatctccgacacaaaagacaaagttccgtagagataatttggttaatgctggcatatt |
176 |
Q |
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| T |
14288494 |
tattcaacttgttacatgatgaaaaaggctcaacacggccatcatctccgacacaaaagacaaagttccgtagagataatttggttaatgctggcatatt |
14288593 |
T |
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| Q |
177 |
tagagaatttgggaataaagtgacatcatgacggttaggacgacaaacagaaagatgaagatgtgttaaaagttgagatgaaaataagcagcgtggt |
273 |
Q |
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| T |
14288594 |
tagagaatttgggaataaagtgatatcatcacgattaggacgacaaacagaaagatgaagatgtgttaaaagttgagatgaaaataagcagcgtggt |
14288690 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 7140316 - 7140361
Alignment:
| Q |
77 |
tattcaacttgttacatgatgaaaaaggctcaacacggccatcatc |
122 |
Q |
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| T |
7140316 |
tattcaacctcttaaatgctgaaaaaggctcaacacggccatcatc |
7140361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 8656231 - 8656276
Alignment:
| Q |
77 |
tattcaacttgttacatgatgaaaaaggctcaacacggccatcatc |
122 |
Q |
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| T |
8656231 |
tattcaacctcttaaatgctgaaaaaggctcaacacggccatcatc |
8656276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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