View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11686_high_4 (Length: 405)

Name: NF11686_high_4
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11686_high_4
NF11686_high_4
[»] chr3 (7 HSPs)
chr3 (1-388)||(31825627-31826014)
chr3 (131-388)||(24981901-24982158)
chr3 (146-382)||(24923536-24923772)
chr3 (44-382)||(25084799-25085144)
chr3 (146-382)||(24497335-24497571)
chr3 (152-388)||(24919956-24920192)
chr3 (62-385)||(21584670-21584989)
[»] chr7 (4 HSPs)
chr7 (153-385)||(10575264-10575496)
chr7 (153-388)||(39954915-39955150)
chr7 (188-385)||(354316-354514)
chr7 (249-384)||(10580760-10580895)
[»] chr8 (1 HSPs)
chr8 (150-352)||(14261138-14261340)
[»] chr4 (3 HSPs)
chr4 (174-386)||(53328612-53328824)
chr4 (228-388)||(22898505-22898665)
chr4 (228-388)||(22950173-22950333)
[»] chr2 (1 HSPs)
chr2 (249-388)||(41027545-41027684)
[»] chr5 (1 HSPs)
chr5 (294-386)||(26358620-26358712)


Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 31826014 - 31825627
Alignment:
Q  1 aattcagttccctcttattcatcccgctctcacgctcccaccaattcataaatactcagatccccttctctctttcccactccaagtcaaaaccaaaccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  31826014 aattcagttccctcttattcatcccgctctcacgctcccacccattcataaatactcagatccccttctctctttcccactccgattcaaaaccaaaccc 31825915  T
Q  101 taatttcccaaatttctcaaatcttcttcgtttctcgaattttcatctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggt 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825914 taatttcccaaatttctcaaatcttcttcgtttctccaattttcatctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggt 31825815  T
Q  201 gcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825814 gcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtg 31825715  T
Q  301 gtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31825714 gtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgctag 31825627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 131 - 388
Target Start/End: Original strand, 24981901 - 24982158
Alignment:
Q  131 tttctcgaattttcatctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgac 230  Q
    |||||||||||||||||| |||||||||||||| ||||| || ||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||     
T  24981901 tttctcgaattttcatcttttgaaaatgtcagggcgtggaaaaggaggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtgat 24982000  T
Q  231 aacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtct 330  Q
    ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  24982001 aacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtct 24982100  T
Q  331 tgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  24982101 tgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctag 24982158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 146 - 382
Target Start/End: Complemental strand, 24923772 - 24923536
Alignment:
Q  146 tctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatc 245  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||| ||||| || || |||||||||||||||    
T  24923772 tctcttgaaaatgtcaggtcgtggtaagggaggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatc 24923673  T
Q  246 actaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttgg 345  Q
    || |||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923672 accaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttgg 24923573  T
Q  346 agaatgtcatccgtgatgcggtcacatacactgagca 382  Q
    |||||||||| |||||||| || ||||||||||||||    
T  24923572 agaatgtcattcgtgatgctgtgacatacactgagca 24923536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 44 - 382
Target Start/End: Original strand, 25084799 - 25085144
Alignment:
Q  44 attcataaatactcagatccccttctctctttcccactc------caagtcaaaaccaaa-ccctaatttcccaaatttctcaaatcttctt--cgttt- 133  Q
    ||||||||||||||||||||  |||||||||||||||||      ||| |||||  |||| |||||||||| | |||||| | ||| |||||  |||||     
T  25084799 attcataaatactcagatccgtttctctctttcccactcacaattcaattcaaattcaaaaccctaatttctctaatttccctaattttcttttcgtttt 25084898  T
Q  134 ctcgaattttcatctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaac 233  Q
    ||| |||||||   ||  |||||||||||||||||| ||||||||||||||  | ||||||||||||||||| ||||| ||||| ||||| || || |||    
T  25084899 ctcaaattttc---tcgcgaaaatgtcaggtcgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataac 25084995  T
Q  234 atccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttga 333  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  25084996 atccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttga 25085095  T
Q  334 agatcttcttggagaatgtcatccgtgatgcggtcacatacactgagca 382  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||||||    
T  25085096 agatcttcttggagaatgtgatccgtgatgcagttacatacactgagca 25085144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 146 - 382
Target Start/End: Complemental strand, 24497571 - 24497335
Alignment:
Q  146 tctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatc 245  Q
    |||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| || || ||||| || ||||||||||||||||||    
T  24497571 tctcttgaaaatgtcagggcgtggaaagggaggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatc 24497472  T
Q  246 actaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttgg 345  Q
    || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24497471 accaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttgg 24497372  T
Q  346 agaatgtcatccgtgatgcggtcacatacactgagca 382  Q
    | ||||| ||||||||||| || ||||||||||||||    
T  24497371 aaaatgtgatccgtgatgcagttacatacactgagca 24497335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 152 - 388
Target Start/End: Complemental strand, 24920192 - 24919956
Alignment:
Q  152 gaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaag 251  Q
    ||||||||| || ||||| ||||||||||||||  | ||||||||||||||||| ||||| || |||||||| || || ||||||||||||||||| |||    
T  24920192 gaaaatgtctggccgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaag 24920093  T
Q  252 cctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatg 351  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24920092 cctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatg 24919993  T
Q  352 tcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    |||| |||||||| || |||||||||||||| |||||    
T  24919992 tcattcgtgatgctgtgacatacactgagcacgctag 24919956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 62 - 385
Target Start/End: Complemental strand, 21584989 - 21584670
Alignment:
Q  62 ccccttctctctttcccactccaagtcaaaaccaaaccctaatttcccaaatttctcaaatcttcttcgtttctcgaattttcatctcttgaaaatgtca 161  Q
    |||||||||| |||||||||| ||  |||  | ||||||||||| |||||||||| ||| | ||||  ||||||| |||||||   ||||||||||||||    
T  21584989 ccccttctctgtttcccactcaaatccaattcaaaaccctaattccccaaatttcccaatt-ttctctgtttctcaaattttc---tcttgaaaatgtca 21584894  T
Q  162 ggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattc 261  Q
    |||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||||| || || ||||| ||||| ||||| ||||| || ||||    
T  21584893 ggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattc 21584794  T
Q  262 gtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtga 361  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||||||||| || |||||    
T  21584793 gtcgattggcgagaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtga 21584694  T
Q  362 tgcggtcacatacactgagcatgc 385  Q
    |||||| || ||||||||||||||    
T  21584693 tgcggttacgtacactgagcatgc 21584670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 153 - 385
Target Start/End: Original strand, 10575264 - 10575496
Alignment:
Q  153 aaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagc 252  Q
    |||||||| |||||||| ||||||||||| ||  |||||||||| |||||||| || ||  | || |||||||| ||||||||||| || ||||| ||||    
T  10575264 aaaatgtctggtcgtggaaagggaggtaaaggattaggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagc 10575363  T
Q  253 ctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgt 352  Q
    | || ||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  10575364 cagcgattcgtcgattggcgagaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgt 10575463  T
Q  353 catccgtgatgcggtcacatacactgagcatgc 385  Q
     ||  | ||||| || || ||||||||||||||    
T  10575464 tataagagatgctgttacttacactgagcatgc 10575496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 153 - 388
Target Start/End: Complemental strand, 39955150 - 39954915
Alignment:
Q  153 aaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagc 252  Q
    ||||||||||||||||| || ||||| |||||  | ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| || || || ||||    
T  39955150 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgacaacatccaaggcataaccaagc 39955051  T
Q  253 ctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgt 352  Q
    |||| ||||||||  | || ||  | |||||||||||||| ||||| ||| | ||||| ||||| ||  | |||||  | ||||||||  | ||||||||    
T  39955050 ctgcgattcgtcgtcttgcaaggcgtggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgt 39954951  T
Q  353 catccgtgatgcggtcacatacactgagcatgctag 388  Q
     || |||||||| || || |||||||||||||||||    
T  39954950 gattcgtgatgctgttacttacactgagcatgctag 39954915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 188 - 385
Target Start/End: Original strand, 354316 - 354514
Alignment:
Q  188 aggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtg 287  Q
    ||||||||||||||||||  | || || || |||||  |||  ||||| || || || || ||||| || |||||| |||||||||||||||||||||||    
T  354316 aggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 354415  T
Q  288 aagaggatcagtgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgc 385  Q
    |||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| || || ||||||||||||||    
T  354416 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgc 354514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 384
Target Start/End: Original strand, 10580760 - 10580895
Alignment:
Q  249 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaga 348  Q
    ||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  |||||  | |||||||| |||||| |||    
T  10580760 aagccagcgattcgtagattggcgagaagagttggtgtgaagaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcaga 10580859  T
Q  349 atgtcatccgtgatgcggtcacatacactgagcatg 384  Q
    ||   || | |||||| || || |||||||||||||    
T  10580860 ataagattcttgatgctgttacttacactgagcatg 10580895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 150 - 352
Target Start/End: Complemental strand, 14261340 - 14261138
Alignment:
Q  150 ttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcacta 249  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| || ||  | ||||| || || ||||||||||| || ||||| |    
T  14261340 ttgaaaatgtcaggtcgtggaaagggaggtaagggattaggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaa 14261241  T
Q  250 agcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaa 349  Q
    |||| || ||||| ||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||||||  | ||||| |||||||| |||||||||||    
T  14261240 agccagcgattcggcgattagcgagaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaa 14261141  T
Q  350 tgt 352  Q
    |||    
T  14261140 tgt 14261138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 386
Target Start/End: Original strand, 53328612 - 53328824
Alignment:
Q  174 ggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcga 273  Q
    ||||| |||||  |||||||||| || || ||| | ||| | || ||||| ||||| ||||||||||| ||||| |||||||| ||||||||  | || |    
T  53328612 ggaggaaagggtttaggaaagggtggagcgaaacgacaccgtaaggttctgcgcgataacatccagggaatcacaaagcctgcgattcgtcgtctcgcaa 53328711  T
Q  274 gaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacata 373  Q
    || | |||||||||||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| || |||||||| ||||||||    
T  53328712 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacata 53328811  T
Q  374 cactgagcatgct 386  Q
    ||| |||||||||    
T  53328812 cacagagcatgct 53328824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 388
Target Start/End: Original strand, 22898505 - 22898665
Alignment:
Q  228 gacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtg 327  Q
    |||||||||||||| || || ||||| || ||||||||  | ||  | ||||| || |||||| | |||||||||||||| ||||| || ||  | || |    
T  22898505 gacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcg 22898604  T
Q  328 tcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    | |||||||| || ||||||||||| ||  | ||||| || || ||||||||||| |||||    
T  22898605 tgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctag 22898665  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 388
Target Start/End: Original strand, 22950173 - 22950333
Alignment:
Q  228 gacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtg 327  Q
    |||||||||||||| || || ||||| || ||||||||  | ||  | ||||| || |||||| | |||||||||||||| ||||| || ||  | || |    
T  22950173 gacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcg 22950272  T
Q  328 tcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    | |||||||| || ||||||||||| ||  | ||||| || || ||||||||||| |||||    
T  22950273 tgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctag 22950333  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 388
Target Start/End: Original strand, 41027545 - 41027684
Alignment:
Q  249 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaga 348  Q
    |||||||| |||||||| |||||  | ||||| || |||||| | || || ||||||||||| ||||| ||  | || || ||||||||||| |||||||    
T  41027545 aagcctgcgattcgtcgtttggcacgtagaggaggagtgaagcgtataagcggtttgatctacgaagagacacgtggcgtgttgaagatctttttggaga 41027644  T
Q  349 atgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    |||| || |||||||| || || ||||| ||||| |||||    
T  41027645 atgttattcgtgatgctgttacttacacagagcacgctag 41027684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 26358712 - 26358620
Alignment:
Q  294 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgct 386  Q
    ||||||||| ||||||||||||||||  | |||||  | ||||| ||  | |||||||| || |||||||| ||||| |||||||| ||||||    
T  26358712 atcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcacttacactgaacatgct 26358620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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