View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_high_5 (Length: 402)
Name: NF11686_high_5
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_high_5 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 9954643 - 9954393
Alignment:
| Q |
3 |
aaaggaggtgtatttcattgctttccaacataaaagtccaacacgttaataacgtgagacttctctcttgaagtgcattgttattggttgatgtattact |
102 |
Q |
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| T |
9954643 |
aaaggaggtgtatttcattgctttccaacataaaagtccaacacgttaataacgtgagacttctctcttgaagtgcattgttattggttgatgtattact |
9954544 |
T |
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| Q |
103 |
tttttatcattggaccatcacataattattgccaaatatccaacacaccacaaacaattccatgagttgacgtgtatattcccacacacgttggattggc |
202 |
Q |
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| T |
9954543 |
tttttatcattggaccatcacataattattgccaaatatccaacgcaccacaaacaattccatgagttgacgtgtatatccccacacacgttggattggc |
9954444 |
T |
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| Q |
203 |
agaagggtctcggattaacgttaacatgctatataagatgaaacaaaagaa |
253 |
Q |
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| T |
9954443 |
agaagggtcgcggattaacattaacatgctatataagatgaaacaaaagaa |
9954393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 23409500 - 23409550
Alignment:
| Q |
334 |
ggtgattcaactggctttgatcatcattcaactgcaattctatgtgtaatt |
384 |
Q |
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| T |
23409500 |
ggtgattcaactggctttgatcatcattcaattgcaattatatgtgtaatt |
23409550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 9954307 - 9954257
Alignment:
| Q |
334 |
ggtgattcaactggctttgatcatcattcaactgcaattctatgtgtaatt |
384 |
Q |
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| T |
9954307 |
ggtgattcaactggctttgatcatcaatcaacggtgattttatgtgtaatt |
9954257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 16420061 - 16420111
Alignment:
| Q |
334 |
ggtgattcaactggctttgatcatcattcaactgcaattctatgtgtaatt |
384 |
Q |
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| T |
16420061 |
ggtgattcaattggctttgatcatcattcaactgcaattttatgtgtaatt |
16420111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 46671538 - 46671487
Alignment:
| Q |
333 |
aggtgattcaactggctttgatcatcattcaactgcaattctatgtgtaatt |
384 |
Q |
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| T |
46671538 |
aggtgattcaattggttttgatcaacattcaattgtaattctatgtgtaatt |
46671487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 41362869 - 41362919
Alignment:
| Q |
334 |
ggtgattcaactggctttgatcatcattcaactgcaattctatgtgtaatt |
384 |
Q |
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| T |
41362869 |
ggtgattcaaccggctttgatcatcattcaattgcaattctatgtgtaatt |
41362919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 384
Target Start/End: Original strand, 275479 - 275518
Alignment:
| Q |
345 |
tggctttgatcatcattcaactgcaattctatgtgtaatt |
384 |
Q |
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| T |
275479 |
tggctttgatcatcattcaactgcaattttatgtgtaatt |
275518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 35023553 - 35023604
Alignment:
| Q |
333 |
aggtgattcaactggctttgatcatcattcaactgcaattctatgtgtaatt |
384 |
Q |
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| T |
35023553 |
aggtgattcaattgactttgatcatcattcaactgtaattctatgtgcaatt |
35023604 |
T |
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