View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11686_high_8 (Length: 385)
Name: NF11686_high_8
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_high_8 |
 | |
|
| [»] scaffold0061 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 13550710 - 13550897
Alignment:
| Q |
17 |
agaactccgcttcaatgtcaatcgttattcgttgtagttgtagttgttgggagcaaagcatctgttacacatttgaaaattgcaataatcaaattaaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13550710 |
agaactccgcttcaatgtcaatcgttattc-------ttgtagttgttgggagcaaagcatctgttacacatttgaaaattgcaataatcaaattaaatc |
13550802 |
T |
|
| Q |
117 |
atgtaaaaacaccttcaattcagatcctaattctctcaaagcatgcatgttatgctctacttatatgataatcgtgtgtgttgttatgtctaacc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13550803 |
atgtaaaaacaccttcaattcagatcctaattctctcaaagcatgcatgttatgctctacttatatgataatcgtgtgtgttgttatgtctaacc |
13550897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 13550975 - 13551056
Alignment:
| Q |
293 |
caacatatagtttgaagttctctcaaaaaacatatagtttgaagtaatggcgtaaatcactagccatttaccacagtttcat |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
13550975 |
caacatatagtttgaagttctctcaaaaaacatatagtttaaagtaatgacgtaaatcactaaccatttaccacagtttcat |
13551056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 27273488 - 27273609
Alignment:
| Q |
53 |
gttgtagttgttgggagcaaagcatctgttacacatttgaaaattgcaataatcaaattaaattatgtaaaaacaccttcaattcagatcctaattctct |
152 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| || |||||||||| |||||| ||||||||||||| |
|
|
| T |
27273488 |
gttgtagttgttgggagcaa-gcatacgttacacatttgagaattgcaataatcaaattaaatctagtcaaaacaccttgaattcaaatcctaattctct |
27273586 |
T |
|
| Q |
153 |
caaagcatgcatgttatgctctactt |
178 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
27273587 |
caaagc---catgttatgctctactt |
27273609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 27273705 - 27273782
Alignment:
| Q |
297 |
atatagtttgaagttctctcaaaaaacatatagtttgaagtaatggcgtaaatcactagccatttaccacagtttcat |
374 |
Q |
| |
|
||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
27273705 |
atatagtttaaagttctctcaaaaaagatacagtttgaagtaatgacgtaaatcactaaccatttaccacagtttcat |
27273782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 392 - 513
Alignment:
| Q |
53 |
gttgtagttgttgggagcaaagcatctgttacacatttgaaaattgcaataatcaaattaaattatgtaaaaacaccttcaattcagatcctaattctct |
152 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||| |
|
|
| T |
392 |
gttgtagttgttgggagcaa-gcatacgtttcacatttgaaaattgcaataatcaaattaaatctagtcaaaacaccttatattcaaatcctaattctct |
490 |
T |
|
| Q |
153 |
caaagcatgcatgttatgctctactt |
178 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
491 |
caaagc---catgttatgctctactt |
513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 5903 - 6024
Alignment:
| Q |
53 |
gttgtagttgttgggagcaaagcatctgttacacatttgaaaattgcaataatcaaattaaattatgtaaaaacaccttcaattcagatcctaattctct |
152 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||| |
|
|
| T |
5903 |
gttgtagttgttgggagcaa-gcatacgtttcacatttgaaaattgcaataatcaaattaaatctagtcaaaacaccttatattcaaatcctaattctct |
6001 |
T |
|
| Q |
153 |
caaagcatgcatgttatgctctactt |
178 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
6002 |
caaagc---catgttatgctctactt |
6024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 608 - 689
Alignment:
| Q |
293 |
caacatatagtttgaagttctctcaaaaaacatatagtttgaagtaatggcgtaaatcactagccatttaccacagtttcat |
374 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||| ||||||| |
|
|
| T |
608 |
caacatataatttaaagttctctcaaaaaacatacagtttgaagtaaagacgtaaatcacaaaccatttaccactgtttcat |
689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 6119 - 6200
Alignment:
| Q |
293 |
caacatatagtttgaagttctctcaaaaaacatatagtttgaagtaatggcgtaaatcactagccatttaccacagtttcat |
374 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||| ||||||| |
|
|
| T |
6119 |
caacatataatttaaagttctctcaaaaaacatacagtttgaagtaaagacgtaaatcacaaaccatttaccactgtttcat |
6200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University