View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_10 (Length: 398)
Name: NF11686_low_10
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 197 - 388
Target Start/End: Complemental strand, 19805176 - 19804985
Alignment:
| Q |
197 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
296 |
Q |
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| T |
19805176 |
agttgtgatttctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
19805077 |
T |
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| Q |
297 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
388 |
Q |
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| T |
19805076 |
agattcatctttacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
19804985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 197 - 388
Target Start/End: Complemental strand, 27775650 - 27775459
Alignment:
| Q |
197 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
296 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775650 |
agttgtgatttctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
27775551 |
T |
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| Q |
297 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
388 |
Q |
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| T |
27775550 |
agattcatctttacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
27775459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 197 - 388
Target Start/End: Original strand, 40577886 - 40578075
Alignment:
| Q |
197 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
296 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40577886 |
agttgtgatttctta--gtaattcaattccgattcaaacaataatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
40577983 |
T |
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| Q |
297 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
40577984 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatctctgttcttatttatttatttgcttttg |
40578075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 40577758 - 40577820
Alignment:
| Q |
70 |
tgaagaaattcctgaagcaggtcattggaaaaatcgtgccaccatgaaatcgtaacagaaacg |
132 |
Q |
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| T |
40577758 |
tgaagaaattcctgaagcaagtcattggaaaaatcgtgccacaatggaatcgtaacagaaacg |
40577820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 40577685 - 40577738
Alignment:
| Q |
21 |
tccgggagatatttcccctggcaaatacacgtgtttcttatagtgtgtgtgaag |
74 |
Q |
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| T |
40577685 |
tccgggagatatttcccctggcaaatacacgtgtttcttgtagtgtgtgtgaag |
40577738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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