View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_11 (Length: 390)
Name: NF11686_low_11
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 1329614 - 1329232
Alignment:
| Q |
1 |
tcaggttcgggttcgggttccttggcttcttcatccgaattgttctcttcttgaacatcagctttattgctttgtgctagcatgttcttatctttgataa |
100 |
Q |
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| T |
1329614 |
tcaggttcgggttcgggttccttggcttcttcatccgaattgttctcttcttgaacatcagctttattgctttgtgctagcatgttcttatctttgataa |
1329515 |
T |
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| Q |
101 |
actcttccataacctctaacttccttggtgtgaccttatctatctcagggtactcagaagagcgacaaattccaatattcttggaccatccatagaagag |
200 |
Q |
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| T |
1329514 |
actcttccataacctctaacttctttggtgtgaccttatctatctcagggtactcagaagagcgacaaattccaatattcttggaccatccatagaagag |
1329415 |
T |
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| Q |
201 |
gtctagctcatcaaactgttttccaatacgacagaaaatgtcatacaccttgatacagtctgcgacatccatgtcaggaaaacggtcgattaagatgctc |
300 |
Q |
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| T |
1329414 |
gtctagctcatcaaactgttttccaatacgacagaaaatgtcatacaccttgatacagtctgcgacatccatgtcagaaaaacggtcgattaagatgctc |
1329315 |
T |
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| Q |
301 |
aatatttctgatatgtcgtaatatgattgaaaactctccttcacaattggataaagagccactatcacaattctatggttctt |
383 |
Q |
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| T |
1329314 |
aatatttctgatatgtcgtaatatgattgaaaactctccttcacaattggataaagagccactatcacaattctatggctctt |
1329232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 1924897 - 1924841
Alignment:
| Q |
321 |
atatgattgaaaactctccttcacaattggataaagagccactatcacaattctatg |
377 |
Q |
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| T |
1924897 |
atatgtttgaaaactctccttcacaattgggtagagtgccactatcaccattctatg |
1924841 |
T |
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