View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_13 (Length: 352)
Name: NF11686_low_13
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 26528047 - 26528372
Alignment:
| Q |
16 |
agaaggaatgtaaatgaatgataaaattactgaacaagaacttccatattcatatcacattcacaaatctgtcaaattaacttggagttcaagaatacct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26528047 |
agaaggaatgtaaatgaatgataaaattactgaacaaaaacttccatattcatatcacattcacaaatctgtcaaattaacttggagttcaagaatacct |
26528146 |
T |
|
| Q |
116 |
cgttggcttcatcaagtgcgcttgttgattcatccagtagagctagttgaggttttgaaagcaaaagacgagcaaacgctagacgttgctgttctcccag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26528147 |
cgttggcttcatcaagtgcgcttgttgattcatccagtagagctagttgaggttttgaaagcaaaagacgagcaaacgctagacgttgctgttctcccag |
26528246 |
T |
|
| Q |
216 |
agagagaacactagaccattcatgtgttgaatccaacccgaaccgaggtaatatgtagccaagacgaacatcctctaagatctttatcagctcgtctgtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26528247 |
agagagaacactagaccattcatgtgttgaatccaacccgaaccgaggtaatatgtagccaagacgaacatcctctaagatctttatcagctcgtctgtt |
26528346 |
T |
|
| Q |
316 |
tttggcttcataagttcactattcat |
341 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
26528347 |
tttggcttcataagttcactattcat |
26528372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 25438442 - 25438117
Alignment:
| Q |
16 |
agaaggaatgtaaatgaatgataaaattactgaacaagaacttccatattcatatcacattcacaaatctgtcaaattaacttggagttcaagaatacct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25438442 |
agaaggaatgtaaatgaatgataaaattactaaacaagaacttccatattcatatcacatttacaaatctgtcaaattaacttggagttcaagaatacct |
25438343 |
T |
|
| Q |
116 |
cgttggcttcatcaagtgcgcttgttgattcatccagtagagctagttgaggttttgaaagcaaaagacgagcaaacgctagacgttgctgttctcccag |
215 |
Q |
| |
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| |||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||| |
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| T |
25438342 |
cattgggttcatcaagtgcgcttgtcgattcatccagtagagctagttgaggttttaaaagcaaaagacgagcaaatgcaagacgttgctgttctcccag |
25438243 |
T |
|
| Q |
216 |
agagagaacactagaccattcatgtgttgaatccaacccgaaccgaggtaatatgtagccaagacgaacatcctctaagatctttatcagctcgtctgtt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
25438242 |
agagagaacactagaccattcatgtgttgaatccaacccaaatcgaggtaatatgtagccaagacggacatcctcgaagatctttatcagctcgtctgtt |
25438143 |
T |
|
| Q |
316 |
tttggcttcataagttcactattcat |
341 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
25438142 |
tttggcttcataagttcactattcat |
25438117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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