View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_14 (Length: 334)
Name: NF11686_low_14
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 18781295 - 18781563
Alignment:
| Q |
14 |
agatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccggtagaagacagagagatctgaggc |
113 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
18781295 |
agatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccgatagaagacagagagatcggaggc |
18781394 |
T |
|
| Q |
114 |
tgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaa |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18781395 |
tgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaa |
18781494 |
T |
|
| Q |
214 |
agattcaagagaaatatgtaaacattagaaactataaataacaatctaaactctaaagtgtccctgcta |
282 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18781495 |
agattcaagagaaatatgtaaaaattagaaactataaataacaatctaaactctaaagtgtccgtgcta |
18781563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 18784769 - 18784797
Alignment:
| Q |
282 |
attgcaagaaagccattagaccactatga |
310 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
18784769 |
attgcaagaaagccattagaccactatga |
18784797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 1623601 - 1623910
Alignment:
| Q |
14 |
agatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccggtagaagacagagagatctgaggc |
113 |
Q |
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||||||||||||| | ||| ||||||||||| ||||| ||||| || |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
1623601 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcacaccgatagaagacagagagatcggaggc |
1623700 |
T |
|
| Q |
114 |
tgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaa |
213 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
1623701 |
tgatcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctgaatttaaa |
1623800 |
T |
|
| Q |
214 |
agattcaagagaaatatgtaaacattagaaactataaataacaatctaaactctaaagtgtccctgcta------ttgcaagaaagccattagaccacta |
307 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | || || ||||||||||||||||||| | || |
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|
| T |
1623801 |
agattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgttagacaagttgcaagaaagccattagagaatta |
1623900 |
T |
|
| Q |
308 |
tgaatatcat |
317 |
Q |
| |
|
|||||||||| |
|
|
| T |
1623901 |
tgaatatcat |
1623910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 1606479 - 1606791
Alignment:
| Q |
14 |
agatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccggtagaagacagagagatctgaggc |
113 |
Q |
| |
|
||||||||||||| | |||||||||||||| ||||| ||||| || |||||||| || || ||||| |||||||| ||||| || |||||||| ||||| |
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|
| T |
1606479 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
1606578 |
T |
|
| Q |
114 |
tgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaa |
213 |
Q |
| |
|
||||| |||||||| |||||||| || || ||||| || |||||||||||||||||||| || |||||||| |||||||||||||| ||| |||||||| |
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|
| T |
1606579 |
tgatcttagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
1606678 |
T |
|
| Q |
214 |
agattcaagagaaatatgt-aaacattagaaactataaataacaatctaaactc--taaagtgtccctgcta------ttgcaagaaagccattagacca |
304 |
Q |
| |
|
||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||||| |
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|
| T |
1606679 |
tgatccaagagaaatatgtaaaaaattagaaactataaataacaatctaaactctataaagtgttcgtgctacataagttgcaagaaagccattagacca |
1606778 |
T |
|
| Q |
305 |
ctatgaatatcat |
317 |
Q |
| |
|
|||||||||||| |
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|
| T |
1606779 |
gtatgaatatcat |
1606791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 10820921 - 10820711
Alignment:
| Q |
14 |
agatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccggtagaagacagagagatctgaggc |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| | ||||||||||||||| |||||||| ||||| |
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|
| T |
10820921 |
agatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtacaccggtagaagacggagagatcagaggc |
10820822 |
T |
|
| Q |
114 |
tgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaa |
213 |
Q |
| |
|
||||||||||||||| |||||||| || || ||||| || |||||||||||||||||||| || |||||||| |||||||||||||| ||| |||||||| |
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|
| T |
10820821 |
tgatcggagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
10820722 |
T |
|
| Q |
214 |
agattcaagag |
224 |
Q |
| |
|
||| |||||| |
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|
| T |
10820721 |
tgatccaagag |
10820711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 1629777 - 1629987
Alignment:
| Q |
14 |
agatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccggtagaagacagagagatctgaggc |
113 |
Q |
| |
|
||||||||||||| | |||||||||||||| ||||| ||||| || |||||||| || || ||||| |||||||| ||||| || |||||||| || || |
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|
| T |
1629777 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggacgc |
1629876 |
T |
|
| Q |
114 |
tgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaa |
213 |
Q |
| |
|
||||| ||||||||||||||||| || || ||||| || |||||||||||||||||||| || |||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
1629877 |
tgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
1629976 |
T |
|
| Q |
214 |
agattcaagag |
224 |
Q |
| |
|
||| |||||| |
|
|
| T |
1629977 |
tgatccaagag |
1629987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 12802875 - 12802984
Alignment:
| Q |
28 |
ctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccggtagaagacagagagatctgaggctgatcggagcgcca |
127 |
Q |
| |
|
||||||||||||||||| || || |||| ||||||||||||||||| | | ||| |||||||||||||| || || ||||||||||| ||||||| |
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|
| T |
12802875 |
ctgtaaaattgacgttgtgcgtgaaccatgagggtgtcttggtagcctttaaaggaacaacggtagaagacagataggtcagaggctgatcgaagcgcca |
12802974 |
T |
|
| Q |
128 |
cagcttgacc |
137 |
Q |
| |
|
| |||||||| |
|
|
| T |
12802975 |
ctgcttgacc |
12802984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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