View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_15 (Length: 323)
Name: NF11686_low_15
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_15 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 45271751 - 45271447
Alignment:
| Q |
19 |
aaggcatacatagcagccgccgtgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatg |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45271751 |
aaggcatacatagcagcagccgtgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaagaaaaatg |
45271652 |
T |
|
| Q |
119 |
gtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagc |
218 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45271651 |
gtgccaagatggctcttgatgactgcaaagacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattgaagc |
45271552 |
T |
|
| Q |
219 |
tgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgag |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271551 |
tgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgag |
45271452 |
T |
|
| Q |
319 |
aagaa |
323 |
Q |
| |
|
||||| |
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|
| T |
45271451 |
aagaa |
45271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 45283525 - 45283221
Alignment:
| Q |
19 |
aaggcatacatagcagccgccgtgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatg |
118 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283525 |
aaggcatacatagcagcctccgtgaaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatg |
45283426 |
T |
|
| Q |
119 |
gtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagc |
218 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
45283425 |
gtgccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagc |
45283326 |
T |
|
| Q |
219 |
tgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgag |
318 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45283325 |
tgttcatgaccaaatcgctgatatgaggaattggttgagtgcggttatctcttacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgag |
45283226 |
T |
|
| Q |
319 |
aagaa |
323 |
Q |
| |
|
||||| |
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|
| T |
45283225 |
aagaa |
45283221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 45275284 - 45274980
Alignment:
| Q |
19 |
aaggcatacatagcagccgccgtgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45275284 |
aaggcatacatagcagccgccgtgaaggcagccactgacaatgtcatgaacgcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatg |
45275185 |
T |
|
| Q |
119 |
gtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||| |
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| T |
45275184 |
gtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctcaaacaattgtcttagtgacaacaacattcaagc |
45275085 |
T |
|
| Q |
219 |
tgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
45275084 |
tgttcatgaccaaactgctgatatgaggaattggttgagtgcagtcatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgag |
45274985 |
T |
|
| Q |
319 |
aagaa |
323 |
Q |
| |
|
||||| |
|
|
| T |
45274984 |
aagaa |
45274980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 45294913 - 45294609
Alignment:
| Q |
19 |
aaggcatacatagcagccgccgtgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatg |
118 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
45294913 |
aaggcatacatagcagccgctgtaaaggcagccactgacaatgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatg |
45294814 |
T |
|
| Q |
119 |
gtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagc |
218 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||| |
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|
| T |
45294813 |
gtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagc |
45294714 |
T |
|
| Q |
219 |
tgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgag |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||| |
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| T |
45294713 |
tgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgag |
45294614 |
T |
|
| Q |
319 |
aagaa |
323 |
Q |
| |
|
||||| |
|
|
| T |
45294613 |
aagaa |
45294609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 45303873 - 45303569
Alignment:
| Q |
19 |
aaggcatacatagcagccgccgtgaaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatg |
118 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
45303873 |
aaggcatacatagcagccgctgtaaaggcagccactgacaatgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatg |
45303774 |
T |
|
| Q |
119 |
gtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattcaagc |
218 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||| |
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|
| T |
45303773 |
gtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagc |
45303674 |
T |
|
| Q |
219 |
tgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgag |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||| |
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|
| T |
45303673 |
tgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgag |
45303574 |
T |
|
| Q |
319 |
aagaa |
323 |
Q |
| |
|
||||| |
|
|
| T |
45303573 |
aagaa |
45303569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 38588727 - 38588644
Alignment:
| Q |
196 |
gttcgtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaa |
279 |
Q |
| |
|
||||| || |||||||||||||| ||||||| ||||| ||||| | ||||||||||||||||| |||||||| ||| ||||| |
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|
| T |
38588727 |
gttcgcgataacaacattcaagccattcatgatcaaacacctgattttaggaattggttgagtgctgttatctcataccaacaa |
38588644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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