View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_16 (Length: 307)
Name: NF11686_low_16
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 29056682 - 29056957
Alignment:
| Q |
13 |
agcagagataggtggtaccattgttcaattatccgaaatcacaaaaacttcaatgcatcctctggccatcatgagagccagttatgaaaagtaataacct |
112 |
Q |
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| T |
29056682 |
agcagagataggtggtaccattgttcaattatccgaaattacaaaa-cttcaatgcatcctctggccatcatgagagccagttatgaaaagtaataacct |
29056780 |
T |
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| Q |
113 |
tttgaaggnnnnnnnnnnnnnnnnnnnttaaagataacgttgacaccaccctttggactctctcaccttcttgaatagtgaatactggaagatataagag |
212 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29056781 |
tttgaaggaaaaaagttaaaagaaaaattaaagataacgttgacaccaccctttggactctctcacctccttgaatagtgaatactggaagatataagag |
29056880 |
T |
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| Q |
213 |
caagaggatcctttatctatcaatgcaatcacactatccactcactaaatttggacactgcaattctggttatacat |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056881 |
caagaggatcctttatctatcaatgcaatcacactatccactcactaaatttggacactgcaattctggttatacat |
29056957 |
T |
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