View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_2 (Length: 769)
Name: NF11686_low_2
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 650; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 20 - 751
Target Start/End: Original strand, 8909637 - 8910361
Alignment:
| Q |
20 |
tttttgttatctccaattgttaacctgtgacaaaataattggacctgcttgcgaggaaaaaacttttcatccctcatcatcttctttatgatcattttgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8909637 |
tttttgttatctccaattgttaacctgtgacaaaataattggacctgcttgcgaggaaaaaacttttcatccctcatc---ttctttatgatcattttgg |
8909733 |
T |
|
| Q |
120 |
tgaattgttccatatggtactgcatatatatacaactagtattttaaggtcacttatgcttttttgagaagaaattatgaaacagatatgtgatcatgag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8909734 |
tgaattgttccatatggtactgcatatatatacaactagtattttaaggtcacttatgcttttttgagaagaaattataaaacagatatgtgatcatgag |
8909833 |
T |
|
| Q |
220 |
ttagggaaaccaccatgaaaggttgattatctgatctgaatataatgttgggaatttctcttagccatattggtaattctctgaaaagtaaccaataaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909834 |
ttagggaaaccaccatgaaaggttgattatctgatctgaatataatgttgggaatttctcttagccatattggtaattctctgaaaagtaaccaataaaa |
8909933 |
T |
|
| Q |
320 |
cgagattaaggaaagatttgtggtaagnnnnnnnnnnnnnttggtagacaaatgtcagcatattaattgttatgttagtatcttctccttcactagggtt |
419 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909934 |
cgagattaaggaaagatttgtggtaagaaaaaaataaaaattggtagacaaatgtcagcatattaattgttatgttagtatcttctccttcactagggtt |
8910033 |
T |
|
| Q |
420 |
tgaaccttgaatcattaactttttcaacttctttaactcttagctcaaatcagttgaacaagatttacaaagatcagtggtattaattcaaatatttgga |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8910034 |
tgaaccttgaatcattaactttttcaacttctttaactcttagctcaaatcagttgaacaagatttacaaagatcagtggtattaattcaaatatttgga |
8910133 |
T |
|
| Q |
520 |
tgaaacttattttggatgaactcattggtcttctcatacggagtcaatcttgctcaagaaagcgtcacacaatgaacgtatatgtctctatcaacaaagt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8910134 |
tgaaacttattttggatgaactcattggtcttctcatacggagtcaatcttgctcaagaaagcgtcacacaatgaacgtatatgtctctatcgacaaagt |
8910233 |
T |
|
| Q |
620 |
tcaacccgtggttcgccacactggaggaataattaacctttctgtttgactcaaccctcgttagtatttggacgaaaaatttgaatcaacaaagaatatg |
719 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8910234 |
tcaactcgtggttcgccacactggaggaa----taacctttctgtttgactcaaccctcgttagtatttggacgaaaaatttgaatcaacaaagaatatg |
8910329 |
T |
|
| Q |
720 |
gccttacccataatttcattatgcttcaatga |
751 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
8910330 |
gccttacccataatttcattatgcttcaatga |
8910361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 31951965 - 31951915
Alignment:
| Q |
374 |
tcagcatattaattgttatgttagtatcttctccttcactagggtttgaac |
424 |
Q |
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|||| |||||| ||||||||||||||| ||||| ||||||||||||||||| |
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| T |
31951965 |
tcagtatattagttgttatgttagtattttctctttcactagggtttgaac |
31951915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 425
Target Start/End: Complemental strand, 26533878 - 26533821
Alignment:
| Q |
368 |
caaatgtcagcatattaattgttatgttagtatcttctccttcactagggtttgaacc |
425 |
Q |
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||||||| || |||||| ||||||||||||||| ||||||||| |||||| ||||||| |
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| T |
26533878 |
caaatgttagtatattagttgttatgttagtattttctccttcgctagggcttgaacc |
26533821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 43675388 - 43675349
Alignment:
| Q |
386 |
ttgttatgttagtatcttctccttcactagggtttgaacc |
425 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||||| |
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| T |
43675388 |
ttgttatgttagtattttctccttcactatggtttgaacc |
43675349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 478
Target Start/End: Original strand, 11660546 - 11660575
Alignment:
| Q |
449 |
tctttaactcttagctcaaatcagttgaac |
478 |
Q |
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| T |
11660546 |
tctttaactcttagctcaaatcagttgaac |
11660575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 434 - 476
Target Start/End: Complemental strand, 15165298 - 15165256
Alignment:
| Q |
434 |
ttaactttttcaacttctttaactcttagctcaaatcagttga |
476 |
Q |
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|||||| |||||||||| |||||||| |||||||||||||||| |
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| T |
15165298 |
ttaactctttcaacttcgttaactctaagctcaaatcagttga |
15165256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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