View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_20 (Length: 258)
Name: NF11686_low_20
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 4961668 - 4961895
Alignment:
| Q |
5 |
taatgtgtacacattatgtaattatgttagtgattagtaaattagtaaattttctttccgatcatgtgcaactagctggatagattgacaccaatttggc |
104 |
Q |
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| T |
4961668 |
taatgtgtacacattatgtaattatgttagtgatta--------gtaaattttctttccgatcatgtgcaactagctggatagattgacaccaatttggc |
4961759 |
T |
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| Q |
105 |
cattgttacatgaaaagcgacatgtgcaataaagaggacattcagttacttatcgattatgaaattaatcacggagagaatattgcactaggtgacaagt |
204 |
Q |
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| T |
4961760 |
cattgttacatgaaaagcgacatgtgcaataaagaggacattcagttacttatagattatgaaattaatcacggagagaatattgcactaggtgacaagt |
4961859 |
T |
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| Q |
205 |
ctagttttattaggcatagttgaaggatgttaatag |
240 |
Q |
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| T |
4961860 |
ctagttttattaggcatagttgaaggatgttaatag |
4961895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 4962946 - 4962976
Alignment:
| Q |
45 |
attagtaaattttctttccgatcatgtgcaa |
75 |
Q |
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| T |
4962946 |
attagtaaattttctttccgatcatgtgcaa |
4962976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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