View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11686_low_25 (Length: 237)

Name: NF11686_low_25
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11686_low_25
NF11686_low_25
[»] chr7 (3 HSPs)
chr7 (1-223)||(22025573-22025794)
chr7 (126-209)||(11621769-11621852)
chr7 (130-174)||(12214172-12214216)
[»] chr4 (6 HSPs)
chr4 (126-174)||(2591576-2591624)
chr4 (126-174)||(2623810-2623858)
chr4 (127-174)||(37424788-37424835)
chr4 (127-174)||(55782877-55782924)
chr4 (127-174)||(55847057-55847104)
chr4 (72-105)||(22638036-22638069)
[»] chr3 (3 HSPs)
chr3 (126-174)||(13622646-13622694)
chr3 (83-120)||(30061622-30061659)
chr3 (125-174)||(48957869-48957918)
[»] chr5 (1 HSPs)
chr5 (126-170)||(15583149-15583193)
[»] chr2 (1 HSPs)
chr2 (126-174)||(6945290-6945338)
[»] chr8 (2 HSPs)
chr8 (127-174)||(44889157-44889204)
chr8 (126-168)||(5869925-5869967)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22025573 - 22025794
Alignment:
Q  1 atgtaaacatatttcatgctttcaggacttaaaaatacgannnnnnnnataggacaaacacaaatatggagatatttacaaggaccatttacctaattaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  22025573 atgtaaacatatttcatgctttgaggacttaaaaatacgattttttt-ataggacaaacacaaatatggagatatttacaagggccatttacttaattaa 22025671  T
Q  101 ccctaaattatattcataggttagacataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaatctcaggaataaatttataatccttga 200  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  22025672 ccctaaattaaattcaaaggttagacataatttatgaaaacttgaaacaaacatgggaaccaaggatttccaatgtcaagaataaatttataatccttga 22025771  T
Q  201 gacaaacacccctaagaagttat 223  Q
    |||||||||||||||||||||||    
T  22025772 gacaaacacccctaagaagttat 22025794  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 11621769 - 11621852
Alignment:
Q  126 cataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaatctcaggaataaatttataatccttgagacaaacac 209  Q
    |||||||||||||||||||||||||| || ||||||||| |||  |||| ||| ||||||||||  ||||| ||| ||||||||    
T  11621769 cataatttatgaaaacttgaaacaaacataggaaccaagtattctcaatgtcacgaataaatttgcaatccatgaaacaaacac 11621852  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 12214216 - 12214172
Alignment:
Q  130 atttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    |||||||||||||||||||||| |||||||||||||||| |||||    
T  12214216 atttatgaaaacttgaaacaaacatgggaaccaaggattcccaat 12214172  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 2591576 - 2591624
Alignment:
Q  126 cataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  2591576 cataatttatgaaaatttgaaacaaacatgggaatcaaggatttccaat 2591624  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 2623810 - 2623858
Alignment:
Q  126 cataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  2623810 cataatttatgaaaacttgaaataaacatgggaaccaaggattttcaat 2623858  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 37424835 - 37424788
Alignment:
Q  127 ataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    |||||||||||||| || ||||||| |||||||||||||||| |||||    
T  37424835 ataatttatgaaaatttaaaacaaatatgggaaccaaggattcccaat 37424788  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 55782924 - 55782877
Alignment:
Q  127 ataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    ||||||||||||||||||||||| | ||||||||||| |||| |||||    
T  55782924 ataatttatgaaaacttgaaacagacatgggaaccaaagattcccaat 55782877  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 55847104 - 55847057
Alignment:
Q  127 ataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    ||||||||||||||||||||||| | ||||||||||| |||| |||||    
T  55847104 ataatttatgaaaacttgaaacagacatgggaaccaaagattcccaat 55847057  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 22638069 - 22638036
Alignment:
Q  72 atatttacaaggaccatttacctaattaacccta 105  Q
    ||||||||||||||||||||| ||||||||||||    
T  22638069 atatttacaaggaccatttacttaattaacccta 22638036  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 13622694 - 13622646
Alignment:
Q  126 cataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    |||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  13622694 cataatttatgataacttgaaacaaacatgggaaccaaggattcccaat 13622646  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 30061622 - 30061659
Alignment:
Q  83 gaccatttacctaattaaccctaaattatattcatagg 120  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  30061622 gaccatttacttaattaaccctaaattatatacatagg 30061659  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 48957869 - 48957918
Alignment:
Q  125 acataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    ||||||||||||||||||| ||||||| |||  || ||||||||||||||    
T  48957869 acataatttatgaaaacttaaaacaaacatgaaaatcaaggatttccaat 48957918  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 15583193 - 15583149
Alignment:
Q  126 cataatttatgaaaacttgaaacaaaaatgggaaccaaggatttc 170  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||    
T  15583193 cataatttatgaaaacttaaaacaaacatgggaacctaggatttc 15583149  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 6945290 - 6945338
Alignment:
Q  126 cataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    |||||||||||||| ||||||||||| ||||||||||||| || |||||    
T  6945290 cataatttatgaaatcttgaaacaaacatgggaaccaaggtttcccaat 6945338  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 44889157 - 44889204
Alignment:
Q  127 ataatttatgaaaacttgaaacaaaaatgggaaccaaggatttccaat 174  Q
    ||||||||||||||||| ||||||| |||| ||||||| |||||||||    
T  44889157 ataatttatgaaaacttaaaacaaacatggaaaccaagaatttccaat 44889204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 5869925 - 5869967
Alignment:
Q  126 cataatttatgaaaacttgaaacaaaaatgggaaccaaggatt 168  Q
    ||||||||||| |||||||||||||| |||||||| |||||||    
T  5869925 cataatttatggaaacttgaaacaaacatgggaacgaaggatt 5869967  T

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