View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_27 (Length: 227)
Name: NF11686_low_27
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_27 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22025180 - 22025406
Alignment:
| Q |
1 |
tttgacatatatggctgtaacacacatattgttgtcgattccgagcaagagtaagcaacccacattttggaaaagacatggaagttgtctatgtagaacc |
100 |
Q |
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| T |
22025180 |
tttgacatatatggctgtatcacacatattgttgtcgattctgagcaagagtaagcaacccacattttggaaaagacatggaagttgtctatgtagaacc |
22025279 |
T |
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| Q |
101 |
aacacttctaattgaaatcttgtccagtgttcgatatgtttcaatatgagaatcatatgttggaactgattttaatagattcaataggttgcatgttcta |
200 |
Q |
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| T |
22025280 |
aacacttctaattgaaatcttgtccagtgttcgatatgtgtcaatatgagaatcatatgttggaactgattttaatagatccaataggttgcatgttcta |
22025379 |
T |
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| Q |
201 |
gaactaggaaggctgagcagatttttt |
227 |
Q |
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| T |
22025380 |
gaactaggaaggctgagcagatttttt |
22025406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 22015477 - 22015538
Alignment:
| Q |
51 |
gtaagcaacccacattttggaaaagacatggaagttgtctatgtagaaccaacacttctaat |
112 |
Q |
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||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
22015477 |
gtaagcaacccactttttgtaaaagacatggaagttgtctgtgtagcaccaacacttctaat |
22015538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 22012251 - 22012279
Alignment:
| Q |
1 |
tttgacatatatggctgtaacacacatat |
29 |
Q |
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| T |
22012251 |
tttgacatatatggctgtaacacacatat |
22012279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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