View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_low_4 (Length: 716)
Name: NF11686_low_4
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 224 - 697
Target Start/End: Original strand, 12552303 - 12552776
Alignment:
| Q |
224 |
ttcgagagctataaataatgtgannnnnnnnatttgtcttgtaggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt |
323 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12552303 |
ttcgagagctataaataatgtgattttttttatttgtcttgtagatggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt |
12552402 |
T |
|
| Q |
324 |
attggaacacaaacataaggaaaaagcttctcaagatgggaattgatcctgaaactcacaagccaagaactgattacaatcacctcatgagtctttcaaa |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12552403 |
attggaacacaaacataaggaaaaagcttctcaagatgggaattgatcctgaaactcacaagccaagaactgattacaatcacctcatgagtctttcaaa |
12552502 |
T |
|
| Q |
424 |
cttacttggcatgtcaaatataggcaatacttttagcaacaaccctcttggtttacaaccagatattacccacctagccaaaatgcaattgttgcaaaat |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12552503 |
cttacttggcatgtcaaatataggcaatacttttagcaacaaccctcttggtttacaaccagatattacccacctagccaaaatgcaattgttgcaaaat |
12552602 |
T |
|
| Q |
524 |
atgttgcaaattatgaacacaaataattcatttggtaacatgggaaattatccttataaccccttagggaatattaaccctagctttaatccattcaatt |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12552603 |
atgttgcaaattatgaacacaaataattcatttggtaacatgggaaattatccttataaccccttagggaatattaaccctagctttaatccattcaatt |
12552702 |
T |
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| Q |
624 |
tgtttttgaatggaacaaacacaattcaaactaacgagccattaggtttgagtggtggtgaagaatatgctatg |
697 |
Q |
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| T |
12552703 |
tgtttttgaatggaacaaacacaattcaaactaatgagccattaggtttgagtggtggtgaagaatatgctatg |
12552776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 12552026 - 12552231
Alignment:
| Q |
20 |
atcaagagagggaaattcacagatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttaacttgttttttcttatg |
119 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12552026 |
atcaagagagggaaattcactgatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttatcttgttttttcttatg |
12552125 |
T |
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| Q |
120 |
tagaaaatgatattgaaatcactctaaagatagcgacggaatttcacagacggaaaaaataatttcgtctctaattccatcactaagtgtt--agacgtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12552126 |
tagaaaatgatattgaaatcactctaaagatagcgacggaatttcagagacggaaaaaataatttcgtctctaattccatcactaagtgttagagacgtc |
12552225 |
T |
|
| Q |
218 |
aatttt |
223 |
Q |
| |
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|||||| |
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| T |
12552226 |
aatttt |
12552231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 42422690 - 42422618
Alignment:
| Q |
300 |
gaacagataacgagataaaaaattattggaacacaaacataaggaaaaagcttctcaagatgggaattgatcc |
372 |
Q |
| |
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||||||| || ||||| |||||| ||||||||||| |||| | ||||||||| | ||||||||||||||||| |
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| T |
42422690 |
gaacagacaatgagattaaaaatcattggaacacacacatcaagaaaaagctcattaagatgggaattgatcc |
42422618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 50200060 - 50200020
Alignment:
| Q |
291 |
taccaggacgaacagataacgagataaaaaattattggaac |
331 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||| |
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| T |
50200060 |
taccaggacgtacagataatgagataaaaaattattggaac |
50200020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 27808566 - 27808608
Alignment:
| Q |
291 |
taccaggacgaacagataacgagataaaaaattattggaacac |
333 |
Q |
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|||||||| |||||||||| |||||||| |||||||||||||| |
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| T |
27808566 |
taccaggaagaacagataatgagataaagaattattggaacac |
27808608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 13344872 - 13344938
Alignment:
| Q |
265 |
taggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaattattggaac |
331 |
Q |
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|||||||||| ||| ||| | ||| ||||||||||||||||||| |||||||| || ||||||||| |
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| T |
13344872 |
taggtggtcggtgatagcatcacatttaccaggacgaacagataatgagataaagaactattggaac |
13344938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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