View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11686_low_6 (Length: 537)

Name: NF11686_low_6
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11686_low_6
NF11686_low_6
[»] chr1 (3 HSPs)
chr1 (19-519)||(52082776-52083276)
chr1 (26-519)||(52092985-52093472)
chr1 (347-411)||(19468017-19468081)
[»] chr5 (1 HSPs)
chr5 (347-413)||(12846116-12846182)
[»] chr4 (4 HSPs)
chr4 (347-412)||(3438161-3438226)
chr4 (344-412)||(641449-641517)
chr4 (350-412)||(21833895-21833957)
chr4 (104-165)||(547193-547254)
[»] chr8 (1 HSPs)
chr8 (270-412)||(17627567-17627709)
[»] chr2 (1 HSPs)
chr2 (98-160)||(32785538-32785600)
[»] chr3 (8 HSPs)
chr3 (98-139)||(33708804-33708845)
chr3 (347-412)||(51763957-51764022)
chr3 (98-165)||(514486-514553)
chr3 (104-139)||(33396785-33396820)
chr3 (104-139)||(37580607-37580642)
chr3 (104-138)||(33093715-33093749)
chr3 (104-136)||(36810812-36810844)
chr3 (113-165)||(51764201-51764253)
[»] chr7 (4 HSPs)
chr7 (104-156)||(10167444-10167496)
chr7 (104-156)||(10169900-10169952)
chr7 (104-156)||(10177425-10177477)
chr7 (350-411)||(10615113-10615174)


Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 52082776 - 52083276
Alignment:
Q  19 ggcaatatctcaggtcaagcacttgcaagtttggaaaaagagaagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52082776 ggcaatatctcaggtcaagcacttgcaagtttggaaaaagagaagccaacattttgatgctttcattcttcaacaatggattgcgagccaaatggagaga 52082875  T
Q  119 cttcacttgagggtatacaacaaagtccagcaaagaattagagttcttatcacaaaactttccaatatcactgtattccattatgatcttgctgaggaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52082876 cttcacttgagggtatacaacaaagtccagcaaagaattagagttcttatcacaaaactttccaatatcactgcattccattatgatcttgctgaggaaa 52082975  T
Q  219 ggacagttcctaactagtgacagcaaggttaattcagtgatattacaatggctaaggtttatagacagcaaactaccaagaaccgtagacaacccaacaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082976 ggacagttcctaactagtgacagcaaggttaattcagtgatattacaatggctaaggtttatagacagcaaactaccaagaaccgtagacaacccaacaa 52083075  T
Q  319 catattgatcattcaaattgaacgaatattgaagatccaaatgttgtaaaaattgacattttgataacaaacaaaagattccagcataactataatctgt 418  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52083076 catattgatcattcaaatagaacgaatattgaagatccaaatgttgtaaaaattgacattttgataacagacaaaagattccagcataactataatctgt 52083175  T
Q  419 acaatttttgagtgaaagtctcttcaaaggcagaccttcctttgcaagagatgagagcaaatggtctgatatacgcaaagacgacaaatcaagacaggtc 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52083176 acaatttttgagtgaaagtctcttcaaaggcagaccttcctttgcaagagatgagagcaaatggtctgatatacgcaaagacgacaaatcaagacaggtc 52083275  T
Q  519 a 519  Q
    |    
T  52083276 a 52083276  T

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Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 26 - 519
Target Start/End: Original strand, 52092985 - 52093472
Alignment:
Q  26 tctcaggtcaagcacttgcaagtttggaaaaagagaagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagagacttcact 125  Q
    ||||||||||||| | |||| |||||| |||||||||| ||||||||||| ||||||||| ||||||  ||||||||  |||||||||||||||||||||    
T  52092985 tctcaggtcaagcccctgcaggtttgggaaaagagaaggcaacattttgatgctttcatttttcaaccgtggattgcctgccaaatggagagacttcact 52093084  T
Q  126 tgagggtatacaacaaagtccagcaaagaattagagttcttatcacaaaactttccaatatcactgtattccattatgatcttgctgaggaaaggacagt 225  Q
    |||||||||||||||||||||| |||| ||||| | |||||||||||||||||||||||| ||||         | |||||| |||||||||||||||||    
T  52093085 tgagggtatacaacaaagtccatcaaacaattacaattcttatcacaaaactttccaataccact---------tctgatctcgctgaggaaaggacagt 52093175  T
Q  226 tcctaactagtgacagcaaggttaattcagtgatatt---acaatggctaaggtttatagacagcaaactaccaagaaccgtagacaacccaacaacata 322  Q
    ||||||||||||||| |||||||||||||||||||||   |||| |||||||||||||||||| |||| |||||||||||  |||||||||||||| ||     
T  52093176 tcctaactagtgacaccaaggttaattcagtgatattggtacaagggctaaggtttatagacaccaaattaccaagaaccaaagacaacccaacaatatc 52093275  T
Q  323 ttgatcattcaaattgaacgaatattgaagatccaaatgttgtaaaaattgacattttgataacaaacaaaagattccagcataactataatctgtacaa 422  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||  || ||    
T  52093276 ttgatcattcaaatagaatgaatattgaagatccaaatgttgtaaaaactgacattttgataacaaacaaaagattccggcataactataatccatagaa 52093375  T
Q  423 tttttgagtgaaagtctcttcaaaggcagaccttcctttgcaagagatgagagcaaatggtctgatatacgcaaagacgacaaatcaagacaggtca 519  Q
    ||||| || ||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||  |||||||||||||||||| ||||    
T  52093376 ttttttagcgaaagtctcttcaaaggaagaccttgctctgcaagagatgagagcaaatgatctgatatacgcgcagacgacaaatcaagacaagtca 52093472  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 19468081 - 19468017
Alignment:
Q  347 ttgaagatccaaatgttgtaaaaattgacattttgataacaaacaaaagattccagcataactat 411  Q
    |||||||||||||||||| |||  |  ||| || |||||||||||||||||||||||||| ||||    
T  19468081 ttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagcatagctat 19468017  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 12846116 - 12846182
Alignment:
Q  347 ttgaagatccaaatgttgtaaaaattgacattttgataacaaacaaaagattccagcataactataa 413  Q
    ||||||||| ||||||||||| |||||||| || |||||||| | ||||||||||| ||||||||||    
T  12846116 ttgaagatctaaatgttgtaataattgacacttggataacaagcgaaagattccagtataactataa 12846182  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 3438226 - 3438161
Alignment:
Q  347 ttgaagatccaaatgttgtaaaaattgacattttgataacaaacaaaagattccagcataactata 412  Q
    |||||||||||||||||||| | ||||||| || ||||||| | |||||||| |||||||||||||    
T  3438226 ttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactata 3438161  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 641449 - 641517
Alignment:
Q  344 atattgaagatccaaatgttgtaaaaattgacattttgataacaaacaaaagattccagcataactata 412  Q
    |||||||||||||| |||||||||| ||| ||  || ||||||||||| ||||||||| ||||| ||||    
T  641449 atattgaagatccagatgttgtaaacatttactcttggataacaaacacaagattccatcataagtata 641517  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 21833957 - 21833895
Alignment:
Q  350 aagatccaaatgttgtaaaaattgacattttgataacaaacaaaagattccagcataactata 412  Q
    ||||||||||||||| | |   |||| ||| ||||||||||||||||||||| ||||||||||    
T  21833957 aagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactata 21833895  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 547193 - 547254
Alignment:
Q  104 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 165  Q
    |||||||||||||||||||| |||||||  ||||||||| |||   ||||||||||| ||||    
T  547193 agccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattct 547254  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 412
Target Start/End: Complemental strand, 17627709 - 17627567
Alignment:
Q  270 ctaaggtttatagacagcaaactaccaagaaccgtagacaacccaacaacatattgatcattcaaattgaacgaatattgaagatccaaatgttgtaaaa 369  Q
    |||||||||| ||||| |||| |||||||||  | ||||||| ||| || || ||||| |||||||    | | ||| ||||||||||||||||| | |     
T  17627709 ctaaggtttacagacaccaaattaccaagaaatgaagacaactcaaaaatatgttgattattcaaaaaataagcatactgaagatccaaatgttggatac 17627610  T
Q  370 attgacattttgataacaaacaaaagattccagcataactata 412  Q
    |||||||  | ||||||||| |||| ||||||| |||||||||    
T  17627609 attgacacatggataacaaagaaaatattccagaataactata 17627567  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 32785600 - 32785538
Alignment:
Q  98 attgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattaga 160  Q
    ||||||||||||||||||| |||| | |||||||  ||||||||| |||| ||||||||||||    
T  32785600 attgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaattaga 32785538  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 33708845 - 33708804
Alignment:
Q  98 attgcgagccaaatggagagacttcacttgagggtatacaac 139  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  33708845 attgtgagccaaatggagagacttcacttgatggtatacaac 33708804  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 51764022 - 51763957
Alignment:
Q  347 ttgaagatccaaatgttgtaaaaattgacattttgataacaaacaaaagattccagcataactata 412  Q
    |||||||||||||||||  |||  |||||| || |||| |||||||| ||||||||||||||||||    
T  51764022 ttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactata 51763957  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 514553 - 514486
Alignment:
Q  98 attgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 165  Q
    |||| ||||||||| |||||| || | ||||||||  ||||||||||||| ||||||||| |||||||    
T  514553 attgtgagccaaatagagagattttaattgagggttcacaacaaagtccaacaaagaattggagttct 514486  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 33396785 - 33396820
Alignment:
Q  104 agccaaatggagagacttcacttgagggtatacaac 139  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33396785 agccaaatggagagacttcacttgatggtatacaac 33396820  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 37580642 - 37580607
Alignment:
Q  104 agccaaatggagagacttcacttgagggtatacaac 139  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37580642 agccaaatggagagacttcacttgatggtatacaac 37580607  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 33093749 - 33093715
Alignment:
Q  104 agccaaatggagagacttcacttgagggtatacaa 138  Q
    ||||||||||||||||||||||||| |||||||||    
T  33093749 agccaaatggagagacttcacttgacggtatacaa 33093715  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 36810844 - 36810812
Alignment:
Q  104 agccaaatggagagacttcacttgagggtatac 136  Q
    ||||||||||||||||||||||||| |||||||    
T  36810844 agccaaatggagagacttcacttgatggtatac 36810812  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 51764253 - 51764201
Alignment:
Q  113 gagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 165  Q
    ||||||||| | ||||||||||||| ||||||||| |||||||| ||| ||||    
T  51764253 gagagactttaattgagggtatacaccaaagtccaccaaagaatcagaattct 51764201  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 10167496 - 10167444
Alignment:
Q  104 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 156  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10167496 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10167444  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 10169952 - 10169900
Alignment:
Q  104 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 156  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10169952 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10169900  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 10177477 - 10177425
Alignment:
Q  104 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 156  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10177477 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10177425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 10615113 - 10615174
Alignment:
Q  350 aagatccaaatgttgtaaaaattgacattttgataacaaacaaaagattccagcataactat 411  Q
    ||||||||||||||| ||   |||||| || ||||| |||||| ||||||||||||||||||    
T  10615113 aagatccaaatgttggaagccttgacacttggataataaacaatagattccagcataactat 10615174  T

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