View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11686_low_8 (Length: 405)

Name: NF11686_low_8
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11686_low_8
NF11686_low_8
[»] chr3 (7 HSPs)
chr3 (1-388)||(31825627-31826014)
chr3 (131-388)||(24981901-24982158)
chr3 (146-382)||(24923536-24923772)
chr3 (44-382)||(25084799-25085144)
chr3 (146-382)||(24497335-24497571)
chr3 (152-388)||(24919956-24920192)
chr3 (62-385)||(21584670-21584989)
[»] chr7 (4 HSPs)
chr7 (153-385)||(10575264-10575496)
chr7 (153-388)||(39954915-39955150)
chr7 (188-385)||(354316-354514)
chr7 (249-384)||(10580760-10580895)
[»] chr8 (1 HSPs)
chr8 (150-352)||(14261138-14261340)
[»] chr4 (3 HSPs)
chr4 (174-386)||(53328612-53328824)
chr4 (228-388)||(22898505-22898665)
chr4 (228-388)||(22950173-22950333)
[»] chr2 (1 HSPs)
chr2 (249-388)||(41027545-41027684)
[»] chr5 (1 HSPs)
chr5 (294-386)||(26358620-26358712)


Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 31826014 - 31825627
Alignment:
Q  1 aattcagttccctcttattcatcccgctctcacgctcccaccaattcataaatactcagatccccttctctctttcccactccaagtcaaaaccaaaccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  31826014 aattcagttccctcttattcatcccgctctcacgctcccacccattcataaatactcagatccccttctctctttcccactccgattcaaaaccaaaccc 31825915  T
Q  101 taatttcccaaatttctcaaatcttcttcgtttctcgaattttcatctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggt 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825914 taatttcccaaatttctcaaatcttcttcgtttctccaattttcatctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggt 31825815  T
Q  201 gcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825814 gcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtg 31825715  T
Q  301 gtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31825714 gtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgctag 31825627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 131 - 388
Target Start/End: Original strand, 24981901 - 24982158
Alignment:
Q  131 tttctcgaattttcatctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgac 230  Q
    |||||||||||||||||| |||||||||||||| ||||| || ||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||     
T  24981901 tttctcgaattttcatcttttgaaaatgtcagggcgtggaaaaggaggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtgat 24982000  T
Q  231 aacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtct 330  Q
    ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  24982001 aacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtct 24982100  T
Q  331 tgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  24982101 tgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctag 24982158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 146 - 382
Target Start/End: Complemental strand, 24923772 - 24923536
Alignment:
Q  146 tctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatc 245  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||| ||||| || || |||||||||||||||    
T  24923772 tctcttgaaaatgtcaggtcgtggtaagggaggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatc 24923673  T
Q  246 actaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttgg 345  Q
    || |||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923672 accaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttgg 24923573  T
Q  346 agaatgtcatccgtgatgcggtcacatacactgagca 382  Q
    |||||||||| |||||||| || ||||||||||||||    
T  24923572 agaatgtcattcgtgatgctgtgacatacactgagca 24923536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 44 - 382
Target Start/End: Original strand, 25084799 - 25085144
Alignment:
Q  44 attcataaatactcagatccccttctctctttcccactc------caagtcaaaaccaaa-ccctaatttcccaaatttctcaaatcttctt--cgttt- 133  Q
    ||||||||||||||||||||  |||||||||||||||||      ||| |||||  |||| |||||||||| | |||||| | ||| |||||  |||||     
T  25084799 attcataaatactcagatccgtttctctctttcccactcacaattcaattcaaattcaaaaccctaatttctctaatttccctaattttcttttcgtttt 25084898  T
Q  134 ctcgaattttcatctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaac 233  Q
    ||| |||||||   ||  |||||||||||||||||| ||||||||||||||  | ||||||||||||||||| ||||| ||||| ||||| || || |||    
T  25084899 ctcaaattttc---tcgcgaaaatgtcaggtcgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataac 25084995  T
Q  234 atccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttga 333  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  25084996 atccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttga 25085095  T
Q  334 agatcttcttggagaatgtcatccgtgatgcggtcacatacactgagca 382  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||||||    
T  25085096 agatcttcttggagaatgtgatccgtgatgcagttacatacactgagca 25085144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 146 - 382
Target Start/End: Complemental strand, 24497571 - 24497335
Alignment:
Q  146 tctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatc 245  Q
    |||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| || || ||||| || ||||||||||||||||||    
T  24497571 tctcttgaaaatgtcagggcgtggaaagggaggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatc 24497472  T
Q  246 actaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttgg 345  Q
    || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24497471 accaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttgg 24497372  T
Q  346 agaatgtcatccgtgatgcggtcacatacactgagca 382  Q
    | ||||| ||||||||||| || ||||||||||||||    
T  24497371 aaaatgtgatccgtgatgcagttacatacactgagca 24497335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 152 - 388
Target Start/End: Complemental strand, 24920192 - 24919956
Alignment:
Q  152 gaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaag 251  Q
    ||||||||| || ||||| ||||||||||||||  | ||||||||||||||||| ||||| || |||||||| || || ||||||||||||||||| |||    
T  24920192 gaaaatgtctggccgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaag 24920093  T
Q  252 cctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatg 351  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24920092 cctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatg 24919993  T
Q  352 tcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    |||| |||||||| || |||||||||||||| |||||    
T  24919992 tcattcgtgatgctgtgacatacactgagcacgctag 24919956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 62 - 385
Target Start/End: Complemental strand, 21584989 - 21584670
Alignment:
Q  62 ccccttctctctttcccactccaagtcaaaaccaaaccctaatttcccaaatttctcaaatcttcttcgtttctcgaattttcatctcttgaaaatgtca 161  Q
    |||||||||| |||||||||| ||  |||  | ||||||||||| |||||||||| ||| | ||||  ||||||| |||||||   ||||||||||||||    
T  21584989 ccccttctctgtttcccactcaaatccaattcaaaaccctaattccccaaatttcccaatt-ttctctgtttctcaaattttc---tcttgaaaatgtca 21584894  T
Q  162 ggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattc 261  Q
    |||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||||| || || ||||| ||||| ||||| ||||| || ||||    
T  21584893 ggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattc 21584794  T
Q  262 gtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtga 361  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||||||||| || |||||    
T  21584793 gtcgattggcgagaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtga 21584694  T
Q  362 tgcggtcacatacactgagcatgc 385  Q
    |||||| || ||||||||||||||    
T  21584693 tgcggttacgtacactgagcatgc 21584670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 153 - 385
Target Start/End: Original strand, 10575264 - 10575496
Alignment:
Q  153 aaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagc 252  Q
    |||||||| |||||||| ||||||||||| ||  |||||||||| |||||||| || ||  | || |||||||| ||||||||||| || ||||| ||||    
T  10575264 aaaatgtctggtcgtggaaagggaggtaaaggattaggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagc 10575363  T
Q  253 ctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgt 352  Q
    | || ||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  10575364 cagcgattcgtcgattggcgagaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgt 10575463  T
Q  353 catccgtgatgcggtcacatacactgagcatgc 385  Q
     ||  | ||||| || || ||||||||||||||    
T  10575464 tataagagatgctgttacttacactgagcatgc 10575496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 153 - 388
Target Start/End: Complemental strand, 39955150 - 39954915
Alignment:
Q  153 aaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagc 252  Q
    ||||||||||||||||| || ||||| |||||  | ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| || || || ||||    
T  39955150 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgacaacatccaaggcataaccaagc 39955051  T
Q  253 ctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgt 352  Q
    |||| ||||||||  | || ||  | |||||||||||||| ||||| ||| | ||||| ||||| ||  | |||||  | ||||||||  | ||||||||    
T  39955050 ctgcgattcgtcgtcttgcaaggcgtggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgt 39954951  T
Q  353 catccgtgatgcggtcacatacactgagcatgctag 388  Q
     || |||||||| || || |||||||||||||||||    
T  39954950 gattcgtgatgctgttacttacactgagcatgctag 39954915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 188 - 385
Target Start/End: Original strand, 354316 - 354514
Alignment:
Q  188 aggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtg 287  Q
    ||||||||||||||||||  | || || || |||||  |||  ||||| || || || || ||||| || |||||| |||||||||||||||||||||||    
T  354316 aggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 354415  T
Q  288 aagaggatcagtgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgc 385  Q
    |||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| || || ||||||||||||||    
T  354416 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgc 354514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 384
Target Start/End: Original strand, 10580760 - 10580895
Alignment:
Q  249 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaga 348  Q
    ||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  |||||  | |||||||| |||||| |||    
T  10580760 aagccagcgattcgtagattggcgagaagagttggtgtgaagaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcaga 10580859  T
Q  349 atgtcatccgtgatgcggtcacatacactgagcatg 384  Q
    ||   || | |||||| || || |||||||||||||    
T  10580860 ataagattcttgatgctgttacttacactgagcatg 10580895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 150 - 352
Target Start/End: Complemental strand, 14261340 - 14261138
Alignment:
Q  150 ttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcacta 249  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| || ||  | ||||| || || ||||||||||| || ||||| |    
T  14261340 ttgaaaatgtcaggtcgtggaaagggaggtaagggattaggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaa 14261241  T
Q  250 agcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaa 349  Q
    |||| || ||||| ||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||||||  | ||||| |||||||| |||||||||||    
T  14261240 agccagcgattcggcgattagcgagaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaa 14261141  T
Q  350 tgt 352  Q
    |||    
T  14261140 tgt 14261138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 386
Target Start/End: Original strand, 53328612 - 53328824
Alignment:
Q  174 ggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcga 273  Q
    ||||| |||||  |||||||||| || || ||| | ||| | || ||||| ||||| ||||||||||| ||||| |||||||| ||||||||  | || |    
T  53328612 ggaggaaagggtttaggaaagggtggagcgaaacgacaccgtaaggttctgcgcgataacatccagggaatcacaaagcctgcgattcgtcgtctcgcaa 53328711  T
Q  274 gaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacata 373  Q
    || | |||||||||||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| || |||||||| ||||||||    
T  53328712 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacata 53328811  T
Q  374 cactgagcatgct 386  Q
    ||| |||||||||    
T  53328812 cacagagcatgct 53328824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 388
Target Start/End: Original strand, 22898505 - 22898665
Alignment:
Q  228 gacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtg 327  Q
    |||||||||||||| || || ||||| || ||||||||  | ||  | ||||| || |||||| | |||||||||||||| ||||| || ||  | || |    
T  22898505 gacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcg 22898604  T
Q  328 tcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    | |||||||| || ||||||||||| ||  | ||||| || || ||||||||||| |||||    
T  22898605 tgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctag 22898665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 388
Target Start/End: Original strand, 22950173 - 22950333
Alignment:
Q  228 gacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtg 327  Q
    |||||||||||||| || || ||||| || ||||||||  | ||  | ||||| || |||||| | |||||||||||||| ||||| || ||  | || |    
T  22950173 gacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcg 22950272  T
Q  328 tcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    | |||||||| || ||||||||||| ||  | ||||| || || ||||||||||| |||||    
T  22950273 tgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctag 22950333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 388
Target Start/End: Original strand, 41027545 - 41027684
Alignment:
Q  249 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaga 348  Q
    |||||||| |||||||| |||||  | ||||| || |||||| | || || ||||||||||| ||||| ||  | || || ||||||||||| |||||||    
T  41027545 aagcctgcgattcgtcgtttggcacgtagaggaggagtgaagcgtataagcggtttgatctacgaagagacacgtggcgtgttgaagatctttttggaga 41027644  T
Q  349 atgtcatccgtgatgcggtcacatacactgagcatgctag 388  Q
    |||| || |||||||| || || ||||| ||||| |||||    
T  41027645 atgttattcgtgatgctgttacttacacagagcacgctag 41027684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 26358712 - 26358620
Alignment:
Q  294 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcatgct 386  Q
    ||||||||| ||||||||||||||||  | |||||  | ||||| ||  | |||||||| || |||||||| ||||| |||||||| ||||||    
T  26358712 atcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcacttacactgaacatgct 26358620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University