View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11687_high_7 (Length: 304)
Name: NF11687_high_7
Description: NF11687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11687_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 94 - 288
Target Start/End: Original strand, 11578392 - 11578596
Alignment:
| Q |
94 |
tgataagtgtgacattaatttatgtatacattttacggcccttattaacttagtttacaagaaactacatgagaaaactccaattcatataaatattgta |
193 |
Q |
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| T |
11578392 |
tgataagtgtgacattaatttatgtatacattttacggcccttattaacttagtttacaagaaacaacatgaaaaaactccaattcatataaatattgta |
11578491 |
T |
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| Q |
194 |
aagcaagg--taaataattaattttttgtacttttacatc--------cacattttgcagtaaattgaagcagaaggccaaagaaaaagagggaggaata |
283 |
Q |
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| T |
11578492 |
aagcaaggtataaataatgaattttttgtacttttacatcgtttccaacacattttgcagtaaattgaagcagaaggccaaagaaagagagggaggaata |
11578591 |
T |
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| Q |
284 |
agatg |
288 |
Q |
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||||| |
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| T |
11578592 |
agatg |
11578596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 11577970 - 11578033
Alignment:
| Q |
1 |
attaatttaacctatagattttcctttccgtggcaaaagtcacgtgcatgcaaaaatagattgt |
64 |
Q |
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| T |
11577970 |
attaatttaacctatagatttccctttctgtggcaaaagtcacatgcatgcaaaaatagattgt |
11578033 |
T |
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