View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11687_low_1 (Length: 761)
Name: NF11687_low_1
Description: NF11687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11687_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 20 - 751
Target Start/End: Original strand, 33529866 - 33530597
Alignment:
| Q |
20 |
gccttgttgcaaaagagcaccacagacatacctgttaatttatccacaactgataagtttttgttgtgtcataatgtttaaattcgattgcatataatat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33529866 |
gccttgttgcaaaagagcaccacagacatacctgttaatttatccacaactgataagtttttgttgtgtcataatgtttaaatttgattgcatataatat |
33529965 |
T |
|
| Q |
120 |
ggaatcaaacatgacttaccaggtgaagttacataatgtctaaacctatcattgcttgagatgcaaaccaaatttgaaccaaatttcaagtccttaacat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33529966 |
ggaatcaaacatgacttaccaggtgaagttacataatgtctaaacctatcattacttgagatgcaaaccaaatttgaaccaaatttcaagtccttaacat |
33530065 |
T |
|
| Q |
220 |
cttcgccgcgtagcattttgagttttagttggatttcaaacaaagccctagcaacctcctcatcgcctggcttttctcttatcaacatttcatagtcttg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33530066 |
cttcgccgcgtagcattttgagttttagttggatttcaaacaaagccctagcaacctcctcatcgcctggcttttctcttatcaacatttcatagtcttg |
33530165 |
T |
|
| Q |
320 |
aattgcagcttcccatctttccaactattatatgcgaaaaacaaaagaaaataacgagttattaaaccatcggaaaccaagtatatagtaaaatttaata |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33530166 |
aattgcagcttcccatctttccaactattatatgcgaaaaacaaaagaaaataacgagttattaaaccatcggaaaccaagtatatagtaaagtttaata |
33530265 |
T |
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| Q |
420 |
ttaatttagaaattaaagcaccttagcattgcaatcagctcgccgcaacattgccttgctataattaggctgaactgtaagagctacattgcagtcttca |
519 |
Q |
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| T |
33530266 |
ttaatttagaaattaaagcaccttagcattgcaatcagctcgccgcaacattgccttgctataattaggctgaactgtaagagctacattgcagtcttca |
33530365 |
T |
|
| Q |
520 |
attgctttctcaaattggccgagcttagaacgacaagctgctctgttacataacagaactgagttgaatggatcatactctagtccttcattgtataccg |
619 |
Q |
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| T |
33530366 |
attgctttctcaaattggccgagcttagaacgacaagctgctctgttacataacagaactgagttgaatggatcatactctagtccttcattgtataccg |
33530465 |
T |
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| Q |
620 |
cacatgcttctgtgaactttgatgccttgaagagcaagttaccactcaatctggcagatgtcgcggctcttgcccttcttaccactacattcacatcggt |
719 |
Q |
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| T |
33530466 |
cacatgcttccgtgaactttgatgccttgaagagcaagttaccactcaatctggcagatgtcgcggctcttgcccttcttaccactacattcacatcggt |
33530565 |
T |
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| Q |
720 |
gttgcttggatcaagtttaaccgctttctgtg |
751 |
Q |
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| T |
33530566 |
gttgcttggatcaagtttagccgctttctgtg |
33530597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 134 - 347
Target Start/End: Original strand, 26207556 - 26207769
Alignment:
| Q |
134 |
cttaccaggtgaagttacataatgtctaaacctatcattgcttgagatgcaaaccaaatttgaaccaaatttcaagtccttaacatcttcgccgcgtagc |
233 |
Q |
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||||||||| || |||||||||||||| || | |||||| ||||||||| |||||||||||||||||||||| || ||||||| |||||| || |||||| |
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| T |
26207556 |
cttaccaggcgaggttacataatgtctgaaacgatcattacttgagatgaaaaccaaatttgaaccaaattttaaatccttaatatcttcaccacgtagc |
26207655 |
T |
|
| Q |
234 |
attttgagttttagttggatttcaaacaaagccctagcaacctcctcatcgcctggcttttctcttatcaacatttcatagtcttgaattgcagcttccc |
333 |
Q |
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|| ||||||| || | |||||||||||||| || || || ||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
26207656 |
atcttgagttggagccgagcctcaaacaaagcccttgccacttcttcatcccctggcttttctcttatcaacatttcgtagtcttgaatggcaacttccc |
26207755 |
T |
|
| Q |
334 |
atctttccaactat |
347 |
Q |
| |
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||| |||||||||| |
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| T |
26207756 |
atcgttccaactat |
26207769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 514 - 667
Target Start/End: Original strand, 26208176 - 26208329
Alignment:
| Q |
514 |
tcttcaattgctttctcaaattggccgagcttagaacgacaagctgctctgttacataacagaactgagttgaatggatcatactctagtccttcattgt |
613 |
Q |
| |
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|||||||||||||| ||| | || || |||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
26208176 |
tcttcaattgctttttcatactgccctagcttagaacgacacgctgctctgttgcataacagaactgagttgtgtggatcatgatctagtccttcattgt |
26208275 |
T |
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| Q |
614 |
ataccgcacatgcttctgtgaactttgatgccttgaagagcaagttaccactca |
667 |
Q |
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|||| ||||||||||| |||| ||||||||||||||||| ||||| ||||||| |
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| T |
26208276 |
atactgcacatgcttccatgaattttgatgccttgaagagtaagtttccactca |
26208329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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