View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11687_low_2 (Length: 541)
Name: NF11687_low_2
Description: NF11687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11687_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 5159936 - 5159400
Alignment:
| Q |
1 |
tttgttaagtgcttctaggtttaacccctctgcggttcggcggagaatgaaacctcgcttttctagggtttcgtcggatattgagagtgggtagtctagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159936 |
tttgttaagtgcttctaggtttaacccctctgcggttcggcggagaatgaaacctcgcttttctagggtttcgtcggatattgagagtgggtagtctagg |
5159837 |
T |
|
| Q |
101 |
cttgcttgacaagaaatggtgaggtttcgtgggtgagtttgtgatttgaagttaagtcgtagggaggatggaacaggagcatagatgttgccacgtaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159836 |
cttgcttgacaagaaatggtgaggtttcgtgggtgagtttgtgatttgaagttaagtcgtagggaggatggaacaggagcatagatgttgccacgtaaga |
5159737 |
T |
|
| Q |
201 |
gcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatttgtagnnnnnnncccctctgtttgtgacctttgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5159736 |
gcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatttgtagtttttttcccctctgtttgtgacctttgt |
5159637 |
T |
|
| Q |
301 |
gtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaaaagctgttgaggataatgtgattagtttggttggtaggtattggctatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5159636 |
gtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggataatgtgattagtttggttggtagttattggctatg |
5159537 |
T |
|
| Q |
401 |
tgctttcttcttgttgggtccacaaatagccatgctttgcaa-ataaagtttagataagggaaaacataccatggagaattatcagttaaatttgacaga |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159536 |
tgctttcttcttgttgggtccacaaatagccatgctttgcaagataaagtttagataagggaaaacataccatggagaattatcagttaaatttgacaga |
5159437 |
T |
|
| Q |
500 |
ttaaacacaggagtacttcttatgtgtctctgcttct |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5159436 |
ttaaacacaggagtacttcttatgtgtctctggttct |
5159400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University