View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11687_low_3 (Length: 460)
Name: NF11687_low_3
Description: NF11687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11687_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Original strand, 12004803 - 12005235
Alignment:
| Q |
16 |
cacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatc |
115 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12004803 |
cacttgcagcatcagccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttgagtgtttccaaagcatgaagacctcttttctcatc |
12004902 |
T |
|
| Q |
116 |
tcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctgcgtacctgaga |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
12004903 |
tcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccactgcatacctgaga |
12005002 |
T |
|
| Q |
216 |
aagaggtagaacacacaaggattagaattatatcaactagacacaaaaacatggttagatatgtcaacatcttcttattgcga-ggtcaggtaactcaac |
314 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
12005003 |
aagaggaagaacacacaaggattaga---atatcaataagactcaaaaacatggttggatatgtcaacatcttcttattgcgagggtcaggtaactcaac |
12005099 |
T |
|
| Q |
315 |
tggtttgagctaaaagttacaggaattggaggtcccagattcaaactcaagcgaagtaggaaaatattaatctaacaattaattattaatattggttatt |
414 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
12005100 |
tggtttgagctaagagttacaggaattggaggtcccagattcaaactcgagcgaagtaggaaaatattaatctaacaattaattattaatattggttgtt |
12005199 |
T |
|
| Q |
415 |
tcnnnnnnntatcttcttattaatattgatcctttg |
450 |
Q |
| |
|
|| |||||||||||||| |||||||||||| |
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|
| T |
12005200 |
tcaaaaaaatatcttcttattaacattgatcctttg |
12005235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 11999585 - 11999789
Alignment:
| Q |
16 |
cacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11999585 |
cacttgaagcatcagcaacatctagttgatgaaataaaacaaaatctgaaagaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatc |
11999684 |
T |
|
| Q |
116 |
tcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctgcgtacctgaga |
215 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| |||| |||||||| |
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|
| T |
11999685 |
tcttgctgtcagcacaactttgattccatctgaagctaactgccttactatctcaaatccaattcctttgtttgatcctgtcaccactgcatacctgagg |
11999784 |
T |
|
| Q |
216 |
aagag |
220 |
Q |
| |
|
||||| |
|
|
| T |
11999785 |
aagag |
11999789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 12014470 - 12014674
Alignment:
| Q |
16 |
cacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatc |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12014470 |
cacttgcagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaggctttgagtgtttccaaagcatgaagacctcttttctcatc |
12014569 |
T |
|
| Q |
116 |
tcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctgcgtacctgaga |
215 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| | |||||||||| |||| |||||||| |
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|
| T |
12014570 |
tcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctcaaatccaatccctttgtttgctccagtcaccactgcatacctgagg |
12014669 |
T |
|
| Q |
216 |
aagag |
220 |
Q |
| |
|
||||| |
|
|
| T |
12014670 |
aagag |
12014674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 11980054 - 11980243
Alignment:
| Q |
16 |
cacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatc |
115 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11980054 |
cacttgcagcatttgccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaatgcatgaagacctcttttctcatc |
11980153 |
T |
|
| Q |
116 |
tcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctgc |
205 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
11980154 |
tcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctctaatccaattcctttgtttgatcctgtcaccactgc |
11980243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 11991918 - 11992089
Alignment:
| Q |
16 |
cacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11991918 |
cacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagaaagaccagaagctttaagtgtttccaaagcatgaagacctcttttctcatc |
11992017 |
T |
|
| Q |
116 |
tcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgtt |
187 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
11992018 |
tcttgatgtaagcaccactttgattacagctgaagctaactgctttactatctctaacccaattcctttgtt |
11992089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 12009903 - 12010098
Alignment:
| Q |
24 |
gcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgctg |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12009903 |
gcatcagccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttgagtgtttccaaagcatgaagacctcttttctcatctcttgatg |
12010002 |
T |
|
| Q |
124 |
taagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctgcgtacctgagaaaga |
219 |
Q |
| |
|
| ||||| |||||||||| |||||||||||| || | ||||||||||| |||||||||||||| | ||| |||||| |||| |||||||| |||| |
|
|
| T |
12010003 |
tgagcaccactttgattctagctgaagctaactgtttaactatctctaacccaattcctttgtttgctcctgtcaccactgcatacctgaggaaga |
12010098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 11974979 - 11975176
Alignment:
| Q |
16 |
cacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatc |
115 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11974979 |
cacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttgagtgtttgcaaagcatgaagacctcttttctcatc |
11975078 |
T |
|
| Q |
116 |
tcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctgcgtacctga |
213 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| | ||||| || || |||||||||||||| | |||||||||| |||| ||||||| |
|
|
| T |
11975079 |
tcttgctgtaagcaccactttgattccagctgaagctaattgcttaactatttcaaacccaattcctttgtttgctccagtcaccactgcatacctga |
11975176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 11984411 - 11984600
Alignment:
| Q |
16 |
cacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatc |
115 |
Q |
| |
|
|||||| ||||| ||| ||||||| ||||| ||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11984411 |
cacttgcagcattagccacatctacttgataaaagacaacaaaatctgaaagaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatc |
11984510 |
T |
|
| Q |
116 |
tcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctgc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| | |||||||| || |||||||||||||| | |||||||||| |||| |
|
|
| T |
11984511 |
tcttgctgtaagcacaactttgattccagctgaagctaactgcttaactatctcaaacccaattcctttgtttgctccagtcaccactgc |
11984600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 15956478 - 15956445
Alignment:
| Q |
375 |
aaaatattaatctaacaattaattattaatattg |
408 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
15956478 |
aaaatattaatctaacaactaattattaatattg |
15956445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 38020371 - 38020431
Alignment:
| Q |
299 |
ggtcaggtaactcaactggtttgagctaaaagttacaggaattggaggtcccagattcaaac |
360 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| |||| |||||||||| || ||||||| |
|
|
| T |
38020371 |
ggtcaggtagctcaactggtttgagctaagggtta-aggagttggaggtccaaggttcaaac |
38020431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 10156339 - 10156371
Alignment:
| Q |
375 |
aaaatattaatctaacaattaattattaatatt |
407 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
10156339 |
aaaatattaatctaacaattaactattaatatt |
10156371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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