View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11687_low_4 (Length: 399)

Name: NF11687_low_4
Description: NF11687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11687_low_4
NF11687_low_4
[»] chr1 (3 HSPs)
chr1 (106-343)||(17545199-17545436)
chr1 (27-108)||(14784086-14784167)
chr1 (27-68)||(49087622-49087663)
[»] chr8 (7 HSPs)
chr8 (178-343)||(6226680-6226845)
chr8 (178-349)||(6233926-6234100)
chr8 (18-108)||(17707499-17707589)
chr8 (106-239)||(6241122-6241258)
chr8 (106-226)||(6249539-6249659)
chr8 (258-337)||(6241036-6241115)
chr8 (284-343)||(6249434-6249493)
[»] chr2 (1 HSPs)
chr2 (116-235)||(42718665-42718784)
[»] chr7 (1 HSPs)
chr7 (27-93)||(12732019-12732085)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 7e-96; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 106 - 343
Target Start/End: Original strand, 17545199 - 17545436
Alignment:
Q  106 gattactcgaaagttcatgaaaaagcctgtgacaattcaggcaaagcctgatgagctgatccttgagggtaccaagcagttttatgttgatgttgacaag 205  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |||    
T  17545199 gattactaggaagttcatgaaaaagcctgtgacaattcaggcaaagcctgatgagctgacccttgagggtatcaagcagttttatgtcgatgttgagaag 17545298  T
Q  206 gaagagtggaagctagagacactatgtgacatctttgagctgacccttaaagctaaatccatcactcattgtatcgtctttgtgaataccatggacaaag 305  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||| |  |||||    
T  17545299 gaagagtggaagctagagacactatgcgacatctttgagctgaccgttaaagctaaatcgatcactcattgtattgtctttgtggataccaggtgcaaag 17545398  T
Q  306 tggattggctcacggacaagatgcgaagcagagatcat 343  Q
    |||||||||||||||||||||||| |||||||||||||    
T  17545399 tggattggctcacggacaagatgcaaagcagagatcat 17545436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 14784086 - 14784167
Alignment:
Q  27 tatataatatatggatgagctgtagaggattgaagttccctgaggatgccgacgtagttgggatgtctagcgactccttgat 108  Q
    |||||||||||||| || || ||||||||||| ||||| ||| || | ||||| |||| |||||||| |||| |||||||||    
T  14784086 tatataatatatgggtgggcggtagaggattggagttctctgggggttccgacctagtcgggatgtccagcggctccttgat 14784167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 49087622 - 49087663
Alignment:
Q  27 tatataatatatggatgagctgtagaggattgaagttccctg 68  Q
    |||||| ||||||| ||||||| |||||||||||||||||||    
T  49087622 tatatattatatgggtgagctgaagaggattgaagttccctg 49087663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 6226845 - 6226680
Alignment:
Q  178 caagcagttttatgttgatgttgacaaggaagagtggaagctagagacactatgtgacatctttgagctgacccttaaagctaaatccatcactcattgt 277  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6226845 caagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgtgacatatttgagctgacccttaaagctaaatccatcactcattgt 6226746  T
Q  278 atcgtctttgtgaataccatggacaaagtggattggctcacggacaagatgcgaagcagagatcat 343  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||    
T  6226745 atcgtctttgtgaataccatggacaaagtggactggctcatggacgagttgcgaagcagagatcat 6226680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 178 - 349
Target Start/End: Complemental strand, 6234100 - 6233926
Alignment:
Q  178 caagcagttttatgttgatgttgacaaggaagagtggaagctagagacactatgtgacatctttgagctgacccttaaagct---aaatccatcactcat 274  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||    
T  6234100 caagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgcgacatctttgagctgacccttaaagcttataaatccatcactcat 6234001  T
Q  275 tgtatcgtctttgtgaataccatggacaaagtggattggctcacggacaagatgcgaagcagagatcattatgtc 349  Q
    |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6234000 tgtatcgtctttgtgaatactatcgacaaagtggactggctcacggacaagatgcgaagcagagatcattatgtc 6233926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 17707499 - 17707589
Alignment:
Q  18 atttaagcctatataatatatggatgagctgtagaggattgaagttccctgaggatgccgacgtagttgggatgtctagcgactccttgat 108  Q
    ||||||||||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17707499 atttaagcctatataatatatggatgagcggcagcagattgaagttccctgaggatgccgacgtagttgggatgtctagcgactccttgat 17707589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 6241258 - 6241122
Alignment:
Q  106 gattactcgaaagttcatgaaaaagcctgtgacaattcaggcaaagcctgatgagctg---atccttgagggtaccaagcagttttatgttgatgttgac 202  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||   | ||||||||||| |||||||||||||||  | ||||||    
T  6241258 gattactaggaagttcatgaaaaagcctgtgacaattcaggcaaagcgtgatgagctgaccacccttgagggtatcaagcagttttatgtcaacgttgac 6241159  T
Q  203 aaggaagagtggaagctagagacactatgtgacatct 239  Q
     ||||| ||||||| ||||||||| ||| ||||||||    
T  6241158 gaggaaaagtggaaactagagacattatatgacatct 6241122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 6249659 - 6249539
Alignment:
Q  106 gattactcgaaagttcatgaaaaagcctgtgacaattcaggcaaagcctgatgagctgatccttgagggtaccaagcagttttatgttgatgttgacaag 205  Q
    ||||||| | ||||||||||| ||||| |||| ||| |  | ||||| ||| ||||||| |||||| |||| |||||||||||||||  |||| || |||    
T  6249659 gattactaggaagttcatgaataagccagtgagaatcctcgtaaagcgtgacgagctgacccttgaaggtatcaagcagttttatgtcaatgtcgataag 6249560  T
Q  206 gaagagtggaagctagagaca 226  Q
    ||||| |||||||| ||||||    
T  6249559 gaagaatggaagcttgagaca 6249539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 6241115 - 6241036
Alignment:
Q  258 ctaaatccatcactcattgtatcgtctttgtgaataccatggacaaagtggattggctcacggacaagatgcgaagcaga 337  Q
    |||||| |||||||||||| || || ||||||||||||  |  ||||||||| ||||||| |||||| ||||||||||||    
T  6241115 ctaaattcatcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcaga 6241036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 343
Target Start/End: Complemental strand, 6249493 - 6249434
Alignment:
Q  284 tttgtgaataccatggacaaagtggattggctcacggacaagatgcgaagcagagatcat 343  Q
    ||||||||||||| |   |||||||| ||||| ||||| |||||||||||||||||||||    
T  6249493 tttgtgaataccaggcggaaagtggactggcttacggataagatgcgaagcagagatcat 6249434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 42718665 - 42718784
Alignment:
Q  116 aagttcatgaaaaagcctgtgacaattcaggcaaagcctgatgagctgatccttgagggtaccaagcagttttatgttgatgttgacaaggaagagtgga 215  Q
    ||||||||||| ||||| |||| ||||| || ||||| ||||||  ||| ||||||||||| ||||||||| || ||  |||||||||||||||||||||    
T  42718665 aagttcatgaataagccagtgagaattctggtaaagcgtgatgaattgacccttgagggtatcaagcagttctacgtgaatgttgacaaggaagagtgga 42718764  T
Q  216 agctagagacactatgtgac 235  Q
    | ||||||||| | ||||||    
T  42718765 aactagagacattgtgtgac 42718784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 12732085 - 12732019
Alignment:
Q  27 tatataatatatggatgagctgtagaggattgaagttccctgaggatgccgacgtagttgggatgtc 93  Q
    |||||||||||||| ||||  | ||||||||||||| ||||| || ||||||| |||| ||||||||    
T  12732085 tatataatatatgggtgagtggcagaggattgaagtcccctgggggtgccgacctagtcgggatgtc 12732019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University