View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11687_low_6 (Length: 306)
Name: NF11687_low_6
Description: NF11687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11687_low_6 |
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| [»] scaffold1678 (1 HSPs) |
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| [»] scaffold0786 (1 HSPs) |
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| [»] scaffold0390 (2 HSPs) |
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Alignment Details
Target: scaffold1678 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold1678
Description:
Target: scaffold1678; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 375 - 648
Alignment:
| Q |
14 |
tgaatgggattaacaaatcgttgcaaagaagaggtagttacacccaggttcttggtggggacagtcatttcgtattccttgtctatgttatatgtacatg |
113 |
Q |
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| T |
375 |
tgaatgggattaacaaaacgttgcaaagaagaggtagttacacccaggttcttggtggggacagtcatttcgtattccttgtctatgttatatgtacatg |
474 |
T |
|
| Q |
114 |
gaccctttccatttactttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggtagtctccttcac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475 |
gaccctttccatttactttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggtagtctccttcac |
574 |
T |
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| Q |
214 |
caatgtcacttttttctcaccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatta |
287 |
Q |
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| T |
575 |
caatgtcacatttttctcaccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatta |
648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 129 - 287
Target Start/End: Complemental strand, 32303509 - 32303351
Alignment:
| Q |
129 |
ctttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggtagtctccttcaccaatgtcactttttt |
228 |
Q |
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| T |
32303509 |
ctttcaccttgcaaacctcttcctcgtgatcacctttacattcaatgttgtagacaccatttttgtcggtggtactctccttcacgaatgtcacgttttt |
32303410 |
T |
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| Q |
229 |
ctcaccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatta |
287 |
Q |
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| T |
32303409 |
gtctccctttgtgcactttaaagtcaccttaacacctgcacgtcatttgatcaagatta |
32303351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 32295865 - 32295709
Alignment:
| Q |
131 |
ttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggtagtctccttcaccaatgtcacttttttct |
230 |
Q |
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| T |
32295865 |
ttcaccttgcaaacctcttcctcgtgatcacctttacattcaatgttgtaggtaccagtttcgtcggtggtgctctccttcacaaatgtcacatttttgt |
32295766 |
T |
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| Q |
231 |
caccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatta |
287 |
Q |
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| T |
32295765 |
ctccctttgtgcactctaaagtcaccttaacacctgcacatcatttaatcaagatta |
32295709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 286
Target Start/End: Original strand, 22138631 - 22138814
Alignment:
| Q |
106 |
tgtacatggaccctttccatttac---tttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggta |
202 |
Q |
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|||||||| ||||||| |||||| ||||||| |||||||||||||||| ||| ||| | | || || |||||||| ||||| || || ||||||| |
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| T |
22138631 |
tgtacatgtaccctttgtatttacgggtttcaccatgcaaacctcttcctcatgataaccctgtactttaatgttgtagaaaccatctttgtcggtggta |
22138730 |
T |
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| Q |
203 |
gtctccttcaccaatgtcacttttttctcaccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatt |
286 |
Q |
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| T |
22138731 |
ctctccttcacaaatgtcacatttttatctcccttagtgcactcaaaagtcactttaacacttgcacatcatttgattaagatt |
22138814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 32240932 - 32241004
Alignment:
| Q |
215 |
aatgtcacttttttctcaccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatta |
287 |
Q |
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| T |
32240932 |
aatgtcacatttttctctcccttagtgcactctaaagtcactttaacacctgcacatcatttgatcaagatta |
32241004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 287
Target Start/End: Original strand, 24429216 - 24429373
Alignment:
| Q |
130 |
tttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggtagtctccttcaccaatgtcacttttttc |
229 |
Q |
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| T |
24429216 |
tttcaccatgcaaacgtcttcctcgtgatcacctttacatacaatcatgtagaaaccatctttgtcggtggtactctccttcttgaatgtcacatttttc |
24429315 |
T |
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| Q |
230 |
tcaccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatta |
287 |
Q |
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| T |
24429316 |
tatcccttagtgcactctatagtcactttaacacctgcgcatcatttgatcaagatta |
24429373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 106 - 286
Target Start/End: Complemental strand, 4100 - 3917
Alignment:
| Q |
106 |
tgtacatggaccctttccatttac---tttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggta |
202 |
Q |
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|||||||| ||||||| |||||| ||||||| |||||||||||||||| ||| ||| | | || || |||||||| ||||| || || ||||||| |
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| T |
4100 |
tgtacatgtaccctttgtatttacgggtttcaccatgcaaacctcttcctcatgataaccgtgtactttaatgttgtagaaaccatctttgtcggtggta |
4001 |
T |
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| Q |
203 |
gtctccttcaccaatgtcacttttttctcaccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatt |
286 |
Q |
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| T |
4000 |
ctctccttcacaaatgtcacatttttctctcccttagtgcactcaaaagtcactttaacacctgcacatcatttgattaagatt |
3917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 286
Target Start/End: Complemental strand, 2633 - 2450
Alignment:
| Q |
106 |
tgtacatggaccctttccatttac---tttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggta |
202 |
Q |
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|||||||| ||||||| |||||| ||||||| |||||||||||||||| ||| ||| | | || || |||||||| ||||| || || ||||||| |
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| T |
2633 |
tgtacatgtaccctttgtatttacgggtttcaccatgcaaacctcttcctcatgataaccctgtactttaatgttgtagaaaccatctttgtcggtggta |
2534 |
T |
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| Q |
203 |
gtctccttcaccaatgtcacttttttctcaccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatt |
286 |
Q |
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| T |
2533 |
ctctccttcacaaatgtcacatttttctctcccttagtgcactcaaaagtcactttaacacctacacatcatttgattaagatt |
2450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 286
Target Start/End: Complemental strand, 15617 - 15434
Alignment:
| Q |
106 |
tgtacatggaccctttccatttac---tttcaccttgcaaacctcttcctcgtgagcaccttcaatttgaaagttgtagataccattttcgtgggtggta |
202 |
Q |
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|||||||| ||||||| |||||| ||||||| |||||||||||||||| ||| ||| | | || || |||||||| ||||| || || ||||||| |
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| T |
15617 |
tgtacatgtaccctttgtatttacgggtttcaccatgcaaacctcttcctcatgataaccctgtactttaatgttgtagaaaccatctttgtcggtggta |
15518 |
T |
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| Q |
203 |
gtctccttcaccaatgtcacttttttctcaccctttgtgcactcgaaagtcactttaacacctgcacatcatttgatcaagatt |
286 |
Q |
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|||||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||| |||||| |
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| T |
15517 |
ctctccttcacaaatgtcacatttttatctcccttagtgcactcaaaagtcactttaacacttgcacatcatttgattaagatt |
15434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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