View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11687_low_9 (Length: 229)
Name: NF11687_low_9
Description: NF11687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11687_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 8689808 - 8689969
Alignment:
| Q |
67 |
aagcaacgatatttgaatctcgactatgagagatatacgaatatttactattggatgttgaatgttgtttttcttttaaagaaaatgctaaggagtgtcc |
166 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
8689808 |
aagcaacgatatttgaatctcgactgtgagagatatgcaaatgcttactattggatgttgaatgttgtttttcttttaaaggaaatgctaacgagtgtcc |
8689907 |
T |
|
| Q |
167 |
ttaagatatttgttaagaagtttgaaattaaaattttatattaagaattatatatttaacaca |
229 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8689908 |
ttaggatatttgttaagaagtttgaaatt-aaattttatattaagaattatatatttaacaca |
8689969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 4232725 - 4232778
Alignment:
| Q |
176 |
ttgttaagaagtttgaaattaaaattttatattaagaattatatatttaacaca |
229 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||||| || |||| |||||| |
|
|
| T |
4232725 |
ttgttaagaagtttaaaaataaaattttatcttaagaatgatgtattcaacaca |
4232778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 11317099 - 11317062
Alignment:
| Q |
149 |
aaatgctaaggagtgtccttaagatatttgttaagaag |
186 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
11317099 |
aaatgctaaagagtgtccttaagatattagttaagaag |
11317062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 8701037 - 8701090
Alignment:
| Q |
176 |
ttgttaagaagtttgaaattaaaattttatattaagaattatatatttaacaca |
229 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||| |||||| |||| |||||| |
|
|
| T |
8701037 |
ttgttaagaagtttaaaataaaaattttatcttaaaaattatgtattcaacaca |
8701090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 29260108 - 29260145
Alignment:
| Q |
149 |
aaatgctaaggagtgtccttaagatatttgttaagaag |
186 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
29260108 |
aaatgctaaagagtgtccttaagacatttgttaagaag |
29260145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University