View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11688_high_1 (Length: 327)
Name: NF11688_high_1
Description: NF11688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11688_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 2073367 - 2073645
Alignment:
| Q |
1 |
tagcgccaaaatcatagaacactgtaaagtgctaaccatatctctgcgtataagctcttggaacttcaacataacacgttggcgtttcgtgattggagtg |
100 |
Q |
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| T |
2073367 |
tagcgccaaaatcatagaacactgtaaagtgctaaccatatctctgcgtataagctcttggaacttcaacataacacgttggcgtttcgtgattggagtg |
2073466 |
T |
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| Q |
101 |
ttacgccatgatggaaatgccttctttgctgcagccactgcagctttaaactcttcatttgtagtcaaaggaacttgtgaaagaacttcttgtgtggcct |
200 |
Q |
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| T |
2073467 |
ttacgccatgatggaaatgccttctttgctgcagccactgcagctttaaactcttcatttgtagtcaaaggaacttgtgaaagaacttcttgtgtggcct |
2073566 |
T |
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| Q |
201 |
aatataacaaaccatatcaatatcagaagcacacctatctcaaaaccgcaaataataaattcaactataagctcaatat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2073567 |
aatataacaaaccatatcaatatcagaagcacacctatctcaaaaccgcaaataataaattcaactataagctcaatat |
2073645 |
T |
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Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 36973750 - 36973579
Alignment:
| Q |
30 |
tgctaaccatatctctgcgtataagctcttggaacttcaacataacacgttggcgtttcgtgattggagtgttacgccatgatggaaatgccttctttgc |
129 |
Q |
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|||| |||||||||||||| || ||||| |||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| || |
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| T |
36973750 |
tgctcaccatatctctgcgaatgagctcctggagcttcaacataacacgttggcgcgtcgtaaccggagtgttacgccatgatggaaatgccttcttagc |
36973651 |
T |
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| Q |
130 |
tgcagccactgcagctttaaactcttcatttgtagtcaaaggaacttgtgaaagaacttcttgtgtggccta |
201 |
Q |
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||||| || ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||| |
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| T |
36973650 |
tgcagatacagcagctttaaactcttcatcagtagtcaatggaacttgtgaaacaacttcttgtgtcgccta |
36973579 |
T |
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