View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11688_high_5 (Length: 250)
Name: NF11688_high_5
Description: NF11688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11688_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 2073088 - 2073306
Alignment:
| Q |
11 |
cagagaacaccggcacaaataattatgaactcaaccatgatctcatcacaataacttctcaagcaacatattataaaagaccaacctaaaccacggaata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2073088 |
cagagaacaccggcacaaataattatgaactcaaccatgatctcatcacaataacttctcaagcaacatattataaaagaccaacctaaaccacggaata |
2073187 |
T |
|
| Q |
111 |
catctccttgtgcatcctttaacgtctttccttgttcggtggtcacattaagggctagtttatcctgaaacaattataaattagtgatagtatttcnnnn |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2073188 |
catctccttgtgcatcctttaacgtctttccttgttcggtggtcacattaagggctagtttatcctgaaacaattataaattagtgatagtatttcaaaa |
2073287 |
T |
|
| Q |
211 |
nnnttaaaatttctgtgat |
229 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2073288 |
aaattaaaatttctgtgat |
2073306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 36973949 - 36973862
Alignment:
| Q |
89 |
gaccaacctaaaccacggaatacatctccttgtgcatcctttaacgtctttccttgttcggtggtcacattaagggctagtttatcct |
176 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||||| | |||||| || |||||||||| |
|
|
| T |
36973949 |
gaccaacctaaaccacgaaacacatctccttgtgcatccttcagtgtctttccttgttcggtggttatattaagagcaagtttatcct |
36973862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University