View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11688_low_3 (Length: 308)
Name: NF11688_low_3
Description: NF11688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11688_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 32483105 - 32482798
Alignment:
| Q |
1 |
tgttgacgctcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctcatgt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32483105 |
tgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaaaccacgactcttacaacaagttctacatctcatgt |
32483006 |
T |
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| Q |
101 |
gaggacaatctttcttagcttggttaccacaatcttgacaacttatcccttcagctgaagaagaagacctcatcgccatagtaaacgccgccgatctcga |
200 |
Q |
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| T |
32483005 |
gaggacaatctttcttagcttggttaccacaatcttgacaacttatcccttcagctgaagaagaagacctcatcgccatagtaaacgccgccgatctcga |
32482906 |
T |
|
| Q |
201 |
cgacgattgatgttcatgatcatctgatgaaaccctgcttggtccaacacctaaaccaactcctggaccgtagagatctcgcgggaagaacggccgtgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482905 |
cgacgattgatgttcatgatcatctgatgaaaccctgcttggtccaacacctaaaccaactcctggaccgtagagatctcgcgggaagaacggccgtgca |
32482806 |
T |
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| Q |
301 |
gcatgcat |
308 |
Q |
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|||||||| |
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| T |
32482805 |
gcatgcat |
32482798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 8102004 - 8101876
Alignment:
| Q |
18 |
tctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctcatgtgaggacaatctttctta |
117 |
Q |
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| T |
8102004 |
tctagcagcaggaacccaagtactcttaacatgagtttgacaatcaaaacctctactcttacaacaagttctacatctcatatgaggacaatctttctta |
8101905 |
T |
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| Q |
118 |
gcttggttaccacaatcttgacaacttat |
146 |
Q |
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| T |
8101904 |
gcttgattcccacaatcttgacaacttat |
8101876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 7418525 - 7418652
Alignment:
| Q |
13 |
cggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctcatgtgaggacaatctt |
112 |
Q |
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|||||| ||| ||| ||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| | || |||||||||| |
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| T |
7418525 |
cggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctt |
7418624 |
T |
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| Q |
113 |
tcttagcttggttaccacaatcttgaca |
140 |
Q |
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| T |
7418625 |
tcttagcttggttaccacaatcttgaca |
7418652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 52767559 - 52767699
Alignment:
| Q |
1 |
tgttgacgctcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctcatgt |
100 |
Q |
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||||| || ||||||||| ||| ||| ||||||||||| || |||||||| |||||||||||||| || ||||| |||||||||||||| ||||| | | |
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| T |
52767559 |
tgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacactgaaaccctcgacttttacaacaagttctgcatcttagat |
52767658 |
T |
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| Q |
101 |
gaggacaatctttcttagcttggttaccacaatcttgacaa |
141 |
Q |
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| T |
52767659 |
gtatacaatctttctttgcttggttaccacagtcctgacaa |
52767699 |
T |
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