View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11688_low_5 (Length: 265)
Name: NF11688_low_5
Description: NF11688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11688_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 48819530 - 48819761
Alignment:
| Q |
21 |
ttgggggtggtttat--tatgacggaacggaagagtttaggttgtagatttttcgtttagtttggtaatccattgaattcttaaatctttgctattaata |
118 |
Q |
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| T |
48819530 |
ttgggggtggtttatattatgacggaacggaagagtttaggttgtagatttttcgtttagtttggtaatccattgaattcttaaatctttgctattaata |
48819629 |
T |
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| Q |
119 |
agattattttgcttataaagaaaaaataactcttcttagagaaatcgtataacaaattaaaaagcatcatgtatgtcacctcatagcatgacattgtgtc |
218 |
Q |
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| T |
48819630 |
agattattttgcttataaagaaaaaataactcttcttagagaaatcgtataacaaattaaaaagcatca--tatgtcacctcatagcatgacattgtgtc |
48819727 |
T |
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| Q |
219 |
attttcatacgccgtaattgcactcttaccatct |
252 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
48819728 |
attttcatacgccgtaattgcactcttaccatct |
48819761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 30724971 - 30724832
Alignment:
| Q |
110 |
ctattaataagattattttgcttataaagaaaaaataactcttcttagagaaatcgtataacaaattaaaaagcatcatgtatgtcacctcatagcatga |
209 |
Q |
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| T |
30724971 |
ctattaataatatttttttgcttataaacaaaaaataactcatcttagagagatcatataacaat---aaaagcatcatgtatgtcaccccatagcatga |
30724875 |
T |
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| Q |
210 |
cattgtgtcattttcatacgccgtaattgcactcttaccatct |
252 |
Q |
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| T |
30724874 |
gattgtgtcattttcatgcgccgcaattgcactcttaccatct |
30724832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 30725088 - 30724995
Alignment:
| Q |
21 |
ttgggggtggtttattatgacggaacggaagagtttaggttgtagatttttcgtttagtttggtaatccattgaattcttaaatctttgctatt |
114 |
Q |
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| T |
30725088 |
ttgggggtagtttattatgacagaacggaagagtttaggtcatcaattttccaattagtttggtaatccattgagttcttaaatcttcgctatt |
30724995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 17572318 - 17572240
Alignment:
| Q |
28 |
tggtttattatgacggaacggaagagtttaggttgtagatttttcgtttagtttggtaatccattgaattcttaaatct |
106 |
Q |
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|||| |||||||| ||| || ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||| |
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| T |
17572318 |
tggtatattatgagggagcgaaagagttcaggttttcaatttttcgcttagttaagtaatccattgaattcttaaatct |
17572240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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