View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11688_low_7 (Length: 240)

Name: NF11688_low_7
Description: NF11688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11688_low_7
NF11688_low_7
[»] chr4 (7 HSPs)
chr4 (18-240)||(31499052-31499278)
chr4 (18-214)||(31472577-31472773)
chr4 (20-159)||(31479090-31479229)
chr4 (41-103)||(31148105-31148167)
chr4 (23-90)||(31157013-31157080)
chr4 (37-159)||(31504275-31504396)
chr4 (135-214)||(31157128-31157204)
[»] chr6 (10 HSPs)
chr6 (19-92)||(28870318-28870391)
chr6 (19-97)||(33285380-33285458)
chr6 (19-97)||(33387940-33388018)
chr6 (20-95)||(33271582-33271657)
chr6 (19-223)||(33304270-33304471)
chr6 (27-95)||(33262420-33262488)
chr6 (20-95)||(31562970-31563045)
chr6 (19-90)||(33398858-33398929)
chr6 (28-95)||(33409773-33409840)
chr6 (19-97)||(33057364-33057442)
[»] scaffold1408 (1 HSPs)
scaffold1408 (19-95)||(430-506)
[»] scaffold0428 (1 HSPs)
scaffold0428 (19-95)||(6176-6252)
[»] chr2 (1 HSPs)
chr2 (19-97)||(17441012-17441090)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 31499278 - 31499052
Alignment:
Q  18 agtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31499278 agtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaa 31499179  T
Q  118 ggattgtgggttcatccgaatg----aattgtatcatcaatgaaaaggcaatgcttctgcaataatgttcactctcgcacaatttaggacagttgaaaat 213  Q
    | ||||||||||||||||||||    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31499178 gaattgtgggttcatccgaatgaattaattgaatcatcaatgaaaatgcaatgctgctgcaataatgttcactctcgcacaatttaggacagttgaaaat 31499079  T
Q  214 gtataatcctcttttcttcacagttgt 240  Q
    |||||||||||||||||||||||||||    
T  31499078 gtataatcctcttttcttcacagttgt 31499052  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 31472773 - 31472577
Alignment:
Q  18 agtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaa 117  Q
    |||||| |||||| |||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||| ||||| | ||||||  ||||||||||    
T  31472773 agtctaatcgtatcgaatcacccttgttctgattgttgaaccaacttggtatttcacttcctggagtaacaatctgaattatatcataacagtcagggaa 31472674  T
Q  118 ggattgtgggttcatccgaatgaattgtatcatcaatgaaaaggcaatgcttctgcaataatgttcactctcgcacaatttaggacagttgaaaatg 214  Q
    ||||||||| ||   | |||||| |||||||||| ||||||| |  ||| |  ||||| ||||||| ||||| | ||| ||||||||||||||||||    
T  31472673 ggattgtggatttgcctgaatgagttgtatcatccatgaaaatgtcatgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatg 31472577  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 31479229 - 31479090
Alignment:
Q  20 tctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaagg 119  Q
    |||||||||||| ||| ||||||||||||||| || ||||||||||  |||||||| |||||||||||||| |||| |  |||| |||||||| || ||     
T  31479229 tctattcgtattaaattacccttgctctgattgttgaaccaacttggcatttcactacctggagtaacaatttgaaccctatcagaggagtcatgggaga 31479130  T
Q  120 attgtgggttcatccgaatgaattgtatcatcaatgaaaa 159  Q
    ||||| ||||   | ||||||||||||||||| |||||||    
T  31479129 attgtcggtttgcctgaatgaattgtatcatccatgaaaa 31479090  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 31148105 - 31148167
Alignment:
Q  41 ttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatca 103  Q
    ||||||||||| || |||||||||| |||||||||||| ||||||||||| ||||||||||||    
T  31148105 ttgctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatcacatca 31148167  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 31157013 - 31157080
Alignment:
Q  23 attcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaat 90  Q
    |||| |||||||||||||| ||||||||| || |||||| ||| |||||||||||| ||| |||||||    
T  31157013 attcttattgaatcaccctcgctctgattgttgaaccaaattggtatttcacttccaggaataacaat 31157080  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 31504396 - 31504275
Alignment:
Q  37 acccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaaggattgtgggttcatccga 136  Q
    ||||||||||| ||| || |||||||||| ||||||| |||| |||||||| || |||||||||| | || |||| |   |||||||||||||   |  |    
T  31504396 acccttgctctaattgttgaaccaacttggtatttcatttccaggagtaacgat-tgaatcacatgaaagtagtcggatgaggattgtgggtttgcctta 31504298  T
Q  137 atgaattgtatcatcaatgaaaa 159  Q
    ||||||||||||||| |||||||    
T  31504297 atgaattgtatcatccatgaaaa 31504275  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 31157128 - 31157204
Alignment:
Q  135 gaatgaattgtatcatcaatgaaaaggcaatgcttctgcaataatgttcactctcgcacaatttaggacagttgaaaatg 214  Q
    |||| |||||||||||| ||||||| || |||||  ||||||    ||||||||| | ||||||||||||||||||||||    
T  31157128 gaatcaattgtatcatccatgaaaatgccatgctattgcaatc---ttcactctcacccaatttaggacagttgaaaatg 31157204  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 28870391 - 28870318
Alignment:
Q  19 gtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatat 92  Q
    ||||||| |||||||| ||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  28870391 gtctatttgtattgaaccacccatgctctgattgttaatccaacttggtatttcacttcctggagtaacaatat 28870318  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 33285380 - 33285458
Alignment:
Q  19 gtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatc 97  Q
    ||||||| ||||||||  ||||  ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  33285380 gtctattggtattgaactacccacgctctgattattaatccaacttggtatttcacttcctggagtaacaatatgaatc 33285458  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 33387940 - 33388018
Alignment:
Q  19 gtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatc 97  Q
    ||||||| |||||||||||||| |||||||||| || | |||||| | |||||||||||||| ||||||||| ||||||    
T  33387940 gtctattagtattgaatcacccatgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatc 33388018  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 33271582 - 33271657
Alignment:
Q  20 tctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaa 95  Q
    |||||| |||| ||||||||| |||||||||| || | |||||||| |||||||||||||||||| | ||||||||    
T  33271582 tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaa 33271657  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 33304270 - 33304471
Alignment:
Q  19 gtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatcacatcataggagtcagggaag 118  Q
    ||||||| ||||||||||||||  ||||| ||| || | |||| ||| ||||||| |||||||||||||||| ||||||  |||| ||||   |||| ||    
T  33304270 gtctatttgtattgaatcacccacgctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtag 33304369  T
Q  119 gattgtgggttcatccgaatgaattgtatcatcaatgaaaaggcaatgcttctgcaataatgttcactctcgcacaatttaggacagttgaaaatgtata 218  Q
    ||||||| |||   |  |||||||||| ||| | ||||||| |  ||||| ||||   || |||| ||||| | |||||| ||||||||||||||| | |    
T  33304370 gattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtcatgctactgc---aacgttccctctcacccaattttggacagttgaaaatgaaca 33304466  T
Q  219 atcct 223  Q
    |||||    
T  33304467 atcct 33304471  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 33262420 - 33262488
Alignment:
Q  27 gtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaa 95  Q
    |||||||||||||| |||||||||| || | |||||||| ||||||| |||||||| ||||||| ||||    
T  33262420 gtattgaatcacccatgctctgattgttgatccaacttggtatttcatttcctggactaacaatttgaa 33262488  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 31563045 - 31562970
Alignment:
Q  20 tctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaa 95  Q
    |||||| |||||||||||||| |||| ||||| || | |||| | | ||||||||||||||||  |||||||||||    
T  31563045 tctattggtattgaatcacccatgctatgattgttgatccaattcggtatttcacttcctggaacaacaatatgaa 31562970  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 33398858 - 33398929
Alignment:
Q  19 gtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaat 90  Q
    ||||||| ||||||||||||||   | |||||| || | |||||||| |||||||||||||||| |||||||    
T  33398858 gtctatttgtattgaatcacccacacactgattgttgatccaacttggtatttcacttcctggaataacaat 33398929  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 33409773 - 33409840
Alignment:
Q  28 tattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaa 95  Q
    ||||||| |||||  ||||||||| || | |||||||| |||||||||||||||||| ||||| ||||    
T  33409773 tattgaagcacccacgctctgattgttgatccaacttggtatttcacttcctggagttacaatttgaa 33409840  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 33057364 - 33057442
Alignment:
Q  19 gtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatc 97  Q
    |||||||  |||||||| |||| | |||||||| || | |||||||| |||||||||||||||| |||| || ||||||    
T  33057364 gtctattgctattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttgaatc 33057442  T

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Target: scaffold1408 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 430 - 506
Alignment:
Q  19 gtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaa 95  Q
    ||||||| |||||||| ||||| |||||||||| || | ||| |||| |||||||||||||||||||||||| ||||    
T  430 gtctattagtattgaaccacccatgctctgattgttgatccagcttggtatttcacttcctggagtaacaatttgaa 506  T

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Target: scaffold0428 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 6176 - 6252
Alignment:
Q  19 gtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaa 95  Q
    ||||||| |||||||| ||||| |||||||||| || | ||| |||| |||||||||||||||||||||||| ||||    
T  6176 gtctattagtattgaaccacccatgctctgattgttgatccagcttggtatttcacttcctggagtaacaatttgaa 6252  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 17441090 - 17441012
Alignment:
Q  19 gtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatc 97  Q
    |||||||| |||||||||||||  ||||| ||| || | |||||||| |||||| ||||||||| ||||||||||||||    
T  17441090 gtctattcttattgaatcacccacgctcttattgttgatccaacttggtatttcgcttcctggactaacaatatgaatc 17441012  T

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