View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11688_low_8 (Length: 229)
Name: NF11688_low_8
Description: NF11688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11688_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 31614500 - 31614431
Alignment:
| Q |
59 |
acgaacatatgacaccgagacaccggacacaattttgtcaaatcaagaagtagaagcatctcttatgaag |
128 |
Q |
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| T |
31614500 |
acgaacatatgacactgagacaccagacacaattttgtcaaatcaagaagtagaagcatctcttatgaag |
31614431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 31614536 - 31614486
Alignment:
| Q |
6 |
aacatcatttaacatccatgaaacactgatacagatacgaacatatgacac |
56 |
Q |
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| T |
31614536 |
aacatcatttagcaagcatgaaacactgatacagatacgaacatatgacac |
31614486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 31614392 - 31614355
Alignment:
| Q |
192 |
tgaaattgacatatttatacataatactttgaaaaata |
229 |
Q |
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| T |
31614392 |
tgaaattgacatatttatacataatactttgaaaaata |
31614355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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