View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11688_low_9 (Length: 215)
Name: NF11688_low_9
Description: NF11688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11688_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 40056929 - 40056743
Alignment:
| Q |
17 |
agttattctgttatcttctcata-caatgtttaatctccaattgagaggcaagtgaatcttaagacttataaagagatgcaattcattctaatgagaact |
115 |
Q |
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| T |
40056929 |
agttattctgttatcttcttataacaatgtttaatctccaattgagaggcaagtgaatcttaagacttataaagagatgcaattcattctaatgagaact |
40056830 |
T |
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| Q |
116 |
attcttttcctacattattttcttctcaaatgttctctattctaattgctctctaaatcaataatcatgcaaaatactttttagttc |
202 |
Q |
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| T |
40056829 |
attcttttactacattattttcttctcaaatgttctctattctaattgctctctaaatcaataatcatataaaatactttttagttc |
40056743 |
T |
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