View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11689_high_1 (Length: 1001)
Name: NF11689_high_1
Description: NF11689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11689_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 811; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 20 - 984
Target Start/End: Original strand, 22989952 - 22990918
Alignment:
| Q |
20 |
atcacttccacaacattctcaccaacttttttcaggatctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggcgac |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22989952 |
atcacttccacaacgttctcaccaacttttttcaggatctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggggac |
22990051 |
T |
|
| Q |
120 |
agcgccagtgcggcctgttacaatttatttcaatgaagttgtcaaaatcgaaacactggaagtgtttgcatgtgcgccctttaacaggagtcttgattcg |
219 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990052 |
agcgccagagcggcctgtaacaatttatttcaatgaagttgtcaaaatcgaagcactggaagtgtttgcatgtgcgccctttaacaggagtcttgattcg |
22990151 |
T |
|
| Q |
220 |
tgtcaatcctatgggacagttaagtgagattcgcgactccccctccatgatatctgaatctgaatattcaagagtagactgaacataatctagtggaagc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
22990152 |
tgtcaatcctatgggacagttaagtgagattcgcgactccccctccatgatatctgaatctgaatattcaagagtagactgaacataatctggaggaagc |
22990251 |
T |
|
| Q |
320 |
ttgggcggcaatgatgcatcaacataactcatataggcaacaagtataatataattaccatcgaattcaccgacagcttgaaaaaga-tttgtcccaaat |
418 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
22990252 |
tcgggtggcaaggatgcatcaacataactcatataggcaacaagtataatataattaccatcgaattcaccaacagcttgaaaaagaatttgtcccaaat |
22990351 |
T |
|
| Q |
419 |
ttaagcatgctgttcaaacaggtgggcatctgtggctgatgatccattccaagcaaagtcctcgtgttaattgcttctccattgacgagaaaattcactt |
518 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
22990352 |
ttaagcatgctgttcaaacaagtgggcatctgtggctgatggtccattccaagcaaagtcctcgtgttaattgcttctccattcacgagaaaattcacat |
22990451 |
T |
|
| Q |
519 |
gctgagggtttatcaggcatgcagatgtctcaatatcctcggtttttgccaccaataaccaaattttgctat-cggactgatgattactcttttgtatat |
617 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||| ||||||||||||||||| ||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
22990452 |
cctgagggtttatcaagcatgcagatgtctcaatattatcagtttctgccaccaataaccaaaattttttattcggactgatgatttttcttttgtatat |
22990551 |
T |
|
| Q |
618 |
tgaagtcaacaacagaagctccaaatccagacttggcttcgattgaagcaataattggacccagtttcatacttggatagaatctttgcattatcatatt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990552 |
tgaagtcaacaacagaagctccaaatccagacttggcttcgattgaagcaataattggacccagtttcatacttggatagaatctttgcattatcatatt |
22990651 |
T |
|
| Q |
718 |
taataatgatgaagaatggtgagaaaaacttggtccggtacttcccagggtgcagtacatcttttctatctcgtgagcaatagatagaagttcttctaac |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
22990652 |
taataatgatgaagaatggtgagaaaaactaggtctggtacttcccagggtgcagtacatcttttctatctcgtgagcaatagttagaagttcttgtgtc |
22990751 |
T |
|
| Q |
818 |
tctttgttctcgaaccatccaaattcacaggcattcttcacagttatcaccaaaactatcaaaactcctagtttatcatcactcttgttttgatagtcta |
917 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
22990752 |
tctttgttctcgaaccatccaaattcacaggcattcttcacagttatcaccaaaactatcacaactcctagttcatcatcactctcgttttgatagtcta |
22990851 |
T |
|
| Q |
918 |
tctttttcatcaacgtatgaagtagttgaatagcttttgaggaaggagtttgaccataggcaattgc |
984 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990852 |
tctttttcatcaacgtatgaagtagttgaatagcttttgaggaaggagtttgaccataggcaattgc |
22990918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 896 - 984
Target Start/End: Complemental strand, 8049268 - 8049180
Alignment:
| Q |
896 |
tcactcttgttttgatagtctatctttttcatcaacgtatgaagtagttgaatagcttttgaggaaggagtttgaccataggcaattgc |
984 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
8049268 |
tcactctttttttgatagtctatcttttttatcaccatatgaagtagttgaatagcttttggggaaggagtttgaccaaaggcaattgc |
8049180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 2541660 - 2541553
Alignment:
| Q |
58 |
ctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggcgacagcgccagtgcggcctgttacaatttatttcaatgaag |
157 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||| | | |||||||| | ||||||||| ||||| ||| ||||||||| ||||||| |
|
|
| T |
2541660 |
ctcaatcatgtttctgtcaagacgaatatctgtatagcagacaggccgagtgcaatgggggcagcgccaggatggcctcttaaaatttattttaatgaag |
2541561 |
T |
|
| Q |
158 |
ttgtcaaa |
165 |
Q |
| |
|
|||||||| |
|
|
| T |
2541560 |
ttgtcaaa |
2541553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 376 - 453
Target Start/End: Complemental strand, 2538189 - 2538112
Alignment:
| Q |
376 |
accatcgaattcaccgacagcttgaaaaagatttgtcccaaatttaagcatgctgttcaaacaggtgggcatctgtgg |
453 |
Q |
| |
|
||||||||| | ||| |||||||||| ||||||||||||||||||||| || | ||| |||||||||||||||||| |
|
|
| T |
2538189 |
accatcgaactgacccacagcttgaagaagatttgtcccaaatttaaggataccagtcacacaggtgggcatctgtgg |
2538112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 49515528 - 49515576
Alignment:
| Q |
333 |
atgcatcaacataactcatataggcaacaagtataatataattaccatc |
381 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
49515528 |
atgcaacaacataattcatataagcaacaagtataatataatgaccatc |
49515576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 419 - 512
Target Start/End: Complemental strand, 49516885 - 49516792
Alignment:
| Q |
419 |
ttaagcatgctgttcaaacaggtgggcatctgtggctgatgatccattccaagcaaagtcctcgtgttaattgcttctccattgacgagaaaat |
512 |
Q |
| |
|
|||||||| || |||| ||| |||| ||||||||| ||||||||||| |||| |||||| |||||||||| || |||||| | |||||||| |
|
|
| T |
49516885 |
ttaagcatactattcacacaagtggtcatctgtggtccatgatccattcaaagcttagtccttgtgttaattgtttttccattcatgagaaaat |
49516792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University