View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11689_high_10 (Length: 310)
Name: NF11689_high_10
Description: NF11689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11689_high_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 44856989 - 44857182
Alignment:
| Q |
14 |
ttctgagcaacgacattagaagaaccaatgttacattcttcaagaccagatttcaaagtgtgacaataaatttcaagcttgttcaactttttctctaact |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44856989 |
ttctgagcaacgacattagaagaaccaatgttacattcttcaagaccagatttcaaagtgtgacaataaatttcaagcttgttcaactttttctctaact |
44857088 |
T |
|
| Q |
114 |
ctgacattgaattcatgagccttgaagcttcttgaagagcttcatctctttttcttgtggcatgaacaagtttgtgagaaagttctgccactgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44857089 |
ctgacattgaattcatgagccttgaagcttcttgaagagcttcatctctttttcttgtggcatgaacaagtttgtgagaaagttctgccactgc |
44857182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 44857244 - 44857285
Alignment:
| Q |
269 |
agctttgaaacaatggatttgaaaatcccatttggactttgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44857244 |
agctttgaaacaatggatttgaaaatcccatttggactttgc |
44857285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 37221678 - 37221719
Alignment:
| Q |
269 |
agctttgaaacaatggatttgaaaatcccatttggactttgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37221678 |
agctttgaaacaatggatttgaaaatcccatttggactttgc |
37221719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University