View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11689_high_1_N (Length: 1089)
Name: NF11689_high_1_N
Description: NF11689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11689_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 890; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 890; E-Value: 0
Query Start/End: Original strand, 15 - 1062
Target Start/End: Original strand, 22989869 - 22990918
Alignment:
| Q |
15 |
aacctgtgttgcggcttctgagacccgaggaatcattttcttctaagagtacttccttcaacgatccatcagcatgatggacaatcacttccacaacatt |
114 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22989869 |
aacctgtgttgcggctgctgagacccgaggaatcattttcttctaagagtacttccttcaacgatccatcagcatgatggacaatcacttccacaacgtt |
22989968 |
T |
|
| Q |
115 |
ctcaccaacttttttcaggatctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggcgacagcgccagtgcggcctg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
22989969 |
ctcaccaacttttttcaggatctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggggacagcgccagagcggcctg |
22990068 |
T |
|
| Q |
215 |
ttacaatttatttcaatgaagttgtcaaaatcgaaacactggaagtgtttgcatgtgcgccctttaacaggagtcttgattcgtgtcaatcctatgggac |
314 |
Q |
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| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22990069 |
taacaatttatttcaatgaagttgtcaaaatcgaagcactggaagtgtttgcatgtgcgccctttaacaggagtcttgattcgtgtcaatcctatgggac |
22990168 |
T |
|
| Q |
315 |
agttaagtgagattcgcgactccccctccatgatatctgaatctgaatattcaagagtagactgaacataatctagtggaagcttgggcggcaatgatgc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||| ||||| |
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| T |
22990169 |
agttaagtgagattcgcgactccccctccatgatatctgaatctgaatattcaagagtagactgaacataatctggaggaagctcgggtggcaaggatgc |
22990268 |
T |
|
| Q |
415 |
atcaacataactcatataggcaacaagtataatataattaccatcgaattcaccgacagcttgaaaaag-atttgtcccaaatttaagcatgctgttcaa |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22990269 |
atcaacataactcatataggcaacaagtataatataattaccatcgaattcaccaacagcttgaaaaagaatttgtcccaaatttaagcatgctgttcaa |
22990368 |
T |
|
| Q |
514 |
acaggtgggcatctgtggctgatgatccattccaagcaaagtcctcgtgttaattgcttctccattgacgagaaaattcacttgctgagggtttatcagg |
613 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| | |
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| T |
22990369 |
acaagtgggcatctgtggctgatggtccattccaagcaaagtcctcgtgttaattgcttctccattcacgagaaaattcacatcctgagggtttatcaag |
22990468 |
T |
|
| Q |
614 |
catgcagatgtctcaatatcctcggtttttgccaccaataaccaaattttgcta-tcggactgatgattactcttttgtatattgaagtcaacaacagaa |
712 |
Q |
| |
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||||||||||||||||||| || |||| ||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22990469 |
catgcagatgtctcaatattatcagtttctgccaccaataaccaaaattttttattcggactgatgatttttcttttgtatattgaagtcaacaacagaa |
22990568 |
T |
|
| Q |
713 |
gctccaaatccagacttggcttcgattgaagcaataattggacccagtttcatacttggatagaatctttgcattatcatatttaataatgatgaagaat |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22990569 |
gctccaaatccagacttggcttcgattgaagcaataattggacccagtttcatacttggatagaatctttgcattatcatatttaataatgatgaagaat |
22990668 |
T |
|
| Q |
813 |
ggtgagaaaaacttggtccggtacttcccagggtgcagtacatcttttctatctcgtgagcaatagatagaagttcttctaactctttgttctcgaacca |
912 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| |
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| T |
22990669 |
ggtgagaaaaactaggtctggtacttcccagggtgcagtacatcttttctatctcgtgagcaatagttagaagttcttgtgtctctttgttctcgaacca |
22990768 |
T |
|
| Q |
913 |
tccaaattcacaggcattcttcacagttatcaccaaaactatcaaaactcctagtttatcatcactcttgttttgatagtctatctttttcatcaacgta |
1012 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22990769 |
tccaaattcacaggcattcttcacagttatcaccaaaactatcacaactcctagttcatcatcactctcgttttgatagtctatctttttcatcaacgta |
22990868 |
T |
|
| Q |
1013 |
tgaagtagttgaatagcttttgaggaaggagtttgaccataggcaattgc |
1062 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22990869 |
tgaagtagttgaatagcttttgaggaaggagtttgaccataggcaattgc |
22990918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 974 - 1062
Target Start/End: Complemental strand, 8049268 - 8049180
Alignment:
| Q |
974 |
tcactcttgttttgatagtctatctttttcatcaacgtatgaagtagttgaatagcttttgaggaaggagtttgaccataggcaattgc |
1062 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
8049268 |
tcactctttttttgatagtctatcttttttatcaccatatgaagtagttgaatagcttttggggaaggagtttgaccaaaggcaattgc |
8049180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 2541660 - 2541553
Alignment:
| Q |
136 |
ctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggcgacagcgccagtgcggcctgttacaatttatttcaatgaag |
235 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||| | | |||||||| | ||||||||| ||||| ||| ||||||||| ||||||| |
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| T |
2541660 |
ctcaatcatgtttctgtcaagacgaatatctgtatagcagacaggccgagtgcaatgggggcagcgccaggatggcctcttaaaatttattttaatgaag |
2541561 |
T |
|
| Q |
236 |
ttgtcaaa |
243 |
Q |
| |
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|||||||| |
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| T |
2541560 |
ttgtcaaa |
2541553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 454 - 531
Target Start/End: Complemental strand, 2538189 - 2538112
Alignment:
| Q |
454 |
accatcgaattcaccgacagcttgaaaaagatttgtcccaaatttaagcatgctgttcaaacaggtgggcatctgtgg |
531 |
Q |
| |
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||||||||| | ||| |||||||||| ||||||||||||||||||||| || | ||| |||||||||||||||||| |
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| T |
2538189 |
accatcgaactgacccacagcttgaagaagatttgtcccaaatttaaggataccagtcacacaggtgggcatctgtgg |
2538112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 411 - 459
Target Start/End: Original strand, 49515528 - 49515576
Alignment:
| Q |
411 |
atgcatcaacataactcatataggcaacaagtataatataattaccatc |
459 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
49515528 |
atgcaacaacataattcatataagcaacaagtataatataatgaccatc |
49515576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 497 - 590
Target Start/End: Complemental strand, 49516885 - 49516792
Alignment:
| Q |
497 |
ttaagcatgctgttcaaacaggtgggcatctgtggctgatgatccattccaagcaaagtcctcgtgttaattgcttctccattgacgagaaaat |
590 |
Q |
| |
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|||||||| || |||| ||| |||| ||||||||| ||||||||||| |||| |||||| |||||||||| || |||||| | |||||||| |
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| T |
49516885 |
ttaagcatactattcacacaagtggtcatctgtggtccatgatccattcaaagcttagtccttgtgttaattgtttttccattcatgagaaaat |
49516792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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