View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11689_high_2 (Length: 392)
Name: NF11689_high_2
Description: NF11689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11689_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 144 - 365
Target Start/End: Complemental strand, 3163530 - 3163314
Alignment:
| Q |
144 |
aagtttttgtacattgttatctatatggtcttacattttaaaattttaatggtttcttct-gtgtgattcactttgtttaaaaacagtttaatataacta |
242 |
Q |
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| T |
3163530 |
aagttgttgaacattgttatctat--ggccttacattttaaaattgtattggtttattcttgtgtgattcaaattgttcaaaaacaattcaatataacta |
3163433 |
T |
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| Q |
243 |
ttttcccatgtattttgttgaacacaaatggaaaaacagccactggtttatttcttttgtatctccttactgaaagaagagtgcacattttacagtttca |
342 |
Q |
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| T |
3163432 |
ctttgccatgtattttgttgatcacaaatggaaaaacagccact----ttttttttttgtatctcattactgaaagaagagtgtacattttacagtttca |
3163337 |
T |
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| Q |
343 |
aataataggattagtttcctttg |
365 |
Q |
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| T |
3163336 |
aataagaggattagtttcctttg |
3163314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 3166794 - 3166762
Alignment:
| Q |
87 |
ctgtgctgtacctccaaatagtttatgcattgg |
119 |
Q |
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| T |
3166794 |
ctgtgctgtatctccaaatagtttatgcattgg |
3166762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 3855632 - 3855697
Alignment:
| Q |
2 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
67 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
3855697 |
T |
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