View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11689_high_3 (Length: 379)
Name: NF11689_high_3
Description: NF11689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11689_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 26 - 298
Target Start/End: Complemental strand, 28783466 - 28783194
Alignment:
| Q |
26 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaacc |
125 |
Q |
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| T |
28783466 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaacc |
28783367 |
T |
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| Q |
126 |
atgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaag |
225 |
Q |
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| T |
28783366 |
atgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaag |
28783267 |
T |
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| Q |
226 |
aaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccacaggttc |
298 |
Q |
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| T |
28783266 |
aaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttc |
28783194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 109 - 291
Target Start/End: Complemental strand, 28783278 - 28783099
Alignment:
| Q |
109 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccac |
208 |
Q |
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| T |
28783278 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccac |
28783179 |
T |
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| Q |
209 |
caccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcca |
291 |
Q |
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| T |
28783178 |
caccagtcccgatcaagaaaccatgtcc---accaaagattgagcacccagttctaccacctgttccaatatataagcctcca |
28783099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 28783532 - 28783448
Alignment:
| Q |
26 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
110 |
Q |
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| T |
28783532 |
aacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgt |
28783448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 28783624 - 28783553
Alignment:
| Q |
33 |
tcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
104 |
Q |
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| T |
28783624 |
tcctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctcc |
28783553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 28783499 - 28783421
Alignment:
| Q |
26 |
aacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
104 |
Q |
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| T |
28783499 |
aacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctcc |
28783421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 28783578 - 28783514
Alignment:
| Q |
46 |
cctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
110 |
Q |
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| T |
28783578 |
cctgtttatgagaaacctcttcctccacctacacctgtctacgagaaacctcttcctccgcctgt |
28783514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 3855697 - 3855632
Alignment:
| Q |
314 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
379 |
Q |
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| T |
3855697 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
3855632 |
T |
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