View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11689_high_4 (Length: 377)

Name: NF11689_high_4
Description: NF11689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11689_high_4
NF11689_high_4
[»] chr1 (9 HSPs)
chr1 (1-362)||(8936168-8936530)
chr1 (1-362)||(8959707-8960051)
chr1 (1-366)||(8924545-8924893)
chr1 (201-359)||(9306840-9306999)
chr1 (207-366)||(9475290-9475450)
chr1 (201-363)||(9245056-9245219)
chr1 (201-366)||(9335503-9335669)
chr1 (218-366)||(8945879-8946028)
chr1 (207-363)||(9359247-9359404)
[»] chr3 (1 HSPs)
chr3 (201-363)||(9168398-9168558)
[»] chr6 (1 HSPs)
chr6 (207-365)||(15912782-15912941)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 8936168 - 8936530
Alignment:
Q  1 atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8936168 atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgttgtaggatatttaagaatttccaaagtaagagcttctgca 8936267  T
Q  101 ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt 200  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  8936268 ttttcatatatagtagtatcaactattcttctctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtataagt 8936367  T
Q  201 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatgtc-catagcattgacc 299  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||    
T  8936368 aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 8936467  T
Q  300 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 362  Q
    |||||||| ||||||  |||| ||||||||||||||||||||||||||||| |||||||||||    
T  8936468 cgacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccaca 8936530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 8959707 - 8960051
Alignment:
Q  1 atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||  || |    
T  8959707 atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaa 8959788  T
Q  101 ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt 200  Q
    | || |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  8959789 tatttatatctagtagtatcaactattctactctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtacaagt 8959888  T
Q  201 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatgtc-catagcattgacc 299  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||    
T  8959889 aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 8959988  T
Q  300 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 362  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  8959989 cgacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccaca 8960051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 8924545 - 8924893
Alignment:
Q  1 atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||  || |    
T  8924545 atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaa 8924626  T
Q  101 ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt 200  Q
    | || |||| |||||||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  8924627 tatttatatctagtagtatcaactattctgctctggtatgtttgatatggatcaacagaatcgaagatataagagctgctgaaattataattgtataagt 8924726  T
Q  201 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatgtc-catagcattgacc 299  Q
    ||||| |||||| || ||||||||||||||||| |||||||||||||||||  |  ||||||||||||||||||||||||||| || ||||| ||| ||     
T  8924727 aatagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttact 8924826  T
Q  300 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 366  Q
    |||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8924827 cgacaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggtt 8924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 359
Target Start/End: Complemental strand, 9306999 - 9306840
Alignment:
Q  201 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatgtc-catagcattgacc 299  Q
    ||||| |||| |||| |||||||||||| |||||||||||  |||||||||  |  |||| ||||||  |||||||||||||| || ||||| ||| |||    
T  9306999 aatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagtatttacc 9306900  T
Q  300 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcacc 359  Q
     || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  9306899 tgaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcacc 9306840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 207 - 366
Target Start/End: Complemental strand, 9475450 - 9475290
Alignment:
Q  207 gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatgtc-catagcattgacccgacaa 305  Q
    ||||||||| | |||||||| ||||||||||||| ||||||||||  |  ||||||||||||| ||||||||||||  || ||| | | | |||||| |     
T  9475450 gaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaag 9475351  T
Q  306 caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 366  Q
    ||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||    
T  9475350 caaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggtt 9475290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 363
Target Start/End: Complemental strand, 9245219 - 9245056
Alignment:
Q  201 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatgtc-catagcattgacc 299  Q
    ||||| |||||| || |||||||  |||||||| |||||||||||||||||||  |||||||||||| |||||||||||||   || ||||| | | |||    
T  9245219 aatagcgaggaagggaggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgtagttgattgccttcacatagtacttacc 9245120  T
Q  300 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag 363  Q
    ||| |||| ||||||   ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  9245119 cgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccacag 9245056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 366
Target Start/End: Original strand, 9335503 - 9335669
Alignment:
Q  201 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattga-tgtccatagcattgacc 299  Q
    ||||| ||||||||| |||| ||||||| |||| |||||| ||||||||||||||||||||||||||  |||||||||||   ||  ||||| ||| |||    
T  9335503 aatagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacc 9335602  T
Q  300 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 366  Q
     || |||| |||||| | ||| ||||||||||||||||||||||| ||| | |||||||||||||||    
T  9335603 tgaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggtt 9335669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 366
Target Start/End: Original strand, 8945879 - 8946028
Alignment:
Q  218 gagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattga-tgtccatagcattgacccgacaacaaagttaaag 316  Q
    ||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||||||| | | ||| | ||| ||| || | ||   ||||      
T  8945879 gagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagcagctttaaca 8945978  T
Q  317 ttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 366  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| ||||||    
T  8945979 ttgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggtt 8946028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 363
Target Start/End: Original strand, 9359247 - 9359404
Alignment:
Q  207 gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttga-ttgatgtccatagcattgacccgacaa 305  Q
    ||||||||| |||||||| |||||||| |||| | |||||||||| |||||||||||| ||   |||||||| ||  ||  ||||| ||| ||| || ||    
T  9359247 gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgtagttgatttcctgcacatagtatttacctgaaaa 9359346  T
Q  306 caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag 363  Q
    || ||||||    || ||||||||||||||||||||||| ||| ||||||||||||||    
T  9359347 cagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacag 9359404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 9168398 - 9168558
Alignment:
Q  201 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatgtc-catagcattgacc 299  Q
    ||||| |||||||||||   |||||||| ||||  ||||| ||||||||||  |  ||||||||||| ||||||||||||||| || ||||| ||| |||    
T  9168398 aatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttacc 9168494  T
Q  300 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag 363  Q
    | | |||| | |||  ||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  9168495 ccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccacag 9168558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 365
Target Start/End: Complemental strand, 15912941 - 15912782
Alignment:
Q  207 gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatgtc-catagcattgacccgacaa 305  Q
    ||||||||| |||||||||||||||||| |  |||| ||||||||||| |||||||||||| || |||||||||     | ||||| | | ||| || ||    
T  15912941 gaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgatttccaacacatagtacttacctgaaaa 15912842  T
Q  306 caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggt 365  Q
    || | |||| ||||| ||||||||||||||||||||||| || |||||||| ||||||||    
T  15912841 cagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggt 15912782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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