View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11689_high_6 (Length: 363)
Name: NF11689_high_6
Description: NF11689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11689_high_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 53679678 - 53679794
Alignment:
| Q |
166 |
gggagattgagaatgatgatttcatgaaaagtagaaatatgtgaagattgttgaatgaatggtttttggatttacatggaagagaagaaagggaagaaga |
265 |
Q |
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| T |
53679678 |
gggagattgagaatgacgatttcatgaaaagtagaaataagtgaagattgttaaatgaatggtatttggatttacatggaagagaagaaagggaagaaga |
53679777 |
T |
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| Q |
266 |
tctatacacacaggttc |
282 |
Q |
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| T |
53679778 |
tctatacacacaggttc |
53679794 |
T |
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Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 53679513 - 53679605
Alignment:
| Q |
1 |
attcaattaggttctatttctgatctaaatggatggattttcaagaaaatcgaacgaaagtaagaaaggtgattcaatgttgattaagcaggt |
93 |
Q |
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| T |
53679513 |
attcaattaggttctatttctgatctaaatggatggattttcaagaaaatcaaacgaaagtaagaaaggtgattcggtgttgattaagcaggt |
53679605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 3855697 - 3855632
Alignment:
| Q |
298 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
363 |
Q |
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| T |
3855697 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
3855632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 32375255 - 32375198
Alignment:
| Q |
216 |
ttgaatgaatggtttttggatttacatggaagagaagaaagggaagaagatctataca |
273 |
Q |
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| T |
32375255 |
ttgaatgaatgatatttggatttacagagaagagaagaaaaggaagaagatccataca |
32375198 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 19266212 - 19266145
Alignment:
| Q |
211 |
gattgttgaatgaatggtttttggatttacatggaagagaagaaagggaagaagatctatacacacag |
278 |
Q |
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| T |
19266212 |
gattgttgaatgaatggaatttggatttacagagaagagaagaaaaggaagaagatccgtacacacag |
19266145 |
T |
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