View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_high_13 (Length: 367)
Name: NF1168_high_13
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 14737945 - 14737671
Alignment:
| Q |
1 |
cactttaacatttcactctactactttttatggcccctacatnnnnnnnttcttggatctgccacaaaacttgttagagaaaaatatggttgaaaaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14737945 |
cactttaacatttcactctactactttttatggcccctacataaaaaaattcttggatccgccacaaaacttgttagagaaaaatatggttgaaaaaata |
14737846 |
T |
|
| Q |
101 |
tatgatgaaaagttgatgcaacacctttttgctcttgttactccctaaatgtgtctgatagtaacaaggggtcttgagattatacaataagcattgacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14737845 |
tatgatgaaaagttgatgcaacacctttttgctcttgttactccctaaatgtgtctgatagtaacaaggggtcttgagattatacaacaagcattgacaa |
14737746 |
T |
|
| Q |
201 |
caacgaacgatcccaatgagaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgatgatgtcc |
275 |
Q |
| |
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|| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14737745 |
cagcggacgatcctaatgagaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcc |
14737671 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 263
Target Start/End: Complemental strand, 14744465 - 14744264
Alignment:
| Q |
67 |
aaacttgttagagaaaaatatggttgaaaaaatatatgatgaaaagttgatgcaacacctttttgctcttgttactcc----ct-aaatgtgtctgatag |
161 |
Q |
| |
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||||||||| ||| |||| ||||| ||||||||| ||||| |||||| |||| | |||| |||||||||||||||||| || |||||||||| ||| |
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| T |
14744465 |
aaacttgtt-gaggaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcacccttttgctcttgttactcctctcctcaaatgtgtctattag |
14744367 |
T |
|
| Q |
162 |
taacaaggggtcttgagattatacaataag-cattgacaacaacgaacgatcccaatgagaaagaacttgatcttgttagcaaatatcttattcaaagta |
260 |
Q |
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||||||||| ||||||||| |||||| || |||||| | || |||||||||||||||| |||||| |||||||||||| | |||||||||||||| ||| |
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| T |
14744366 |
taacaagggatcttgagatcatacaacaaaacattgatagcagcgaacgatcccaatgaaaaagaaattgatcttgttatcgaatatcttattcaaggta |
14744267 |
T |
|
| Q |
261 |
aag |
263 |
Q |
| |
|
||| |
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|
| T |
14744266 |
aag |
14744264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 10487854 - 10487759
Alignment:
| Q |
127 |
ttttgctcttgttactccctaaatgtgtctgatagtaacaaggggtcttgagattatacaataagcattgacaacaacgaacgatcccaatgagaa |
222 |
Q |
| |
|
||||||| ||||||||| || | |||| |||||||||||||| |||||| ||||||||| || ||||||||||| | || |||||||||||||| |
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| T |
10487854 |
ttttgctactgttactccttagagttgtccgatagtaacaagggatcttgatattatacaacaatcattgacaacatcaaatgatcccaatgagaa |
10487759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 19358534 - 19358506
Alignment:
| Q |
3 |
ctttaacatttcactctactactttttat |
31 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
19358534 |
ctttaacatttcactctactactttttat |
19358506 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 61 - 275
Target Start/End: Original strand, 17588893 - 17589107
Alignment:
| Q |
61 |
gccacaaaacttgttagagaaaaatatggttgaaaaaatatatgatgaaaagttgatgcaacacctttttgctcttgttactccctaaatgtgtctgata |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17588893 |
gccacaaaacttgttagagaaaaatatggttgaaaaaatatttgatgaaaagccgatgcaacacctttttgctcttgttactccctaaatgtgtccgata |
17588992 |
T |
|
| Q |
161 |
gtaacaaggggtcttgagattatacaataagcattgacaacaacgaacgatcccaatgagaaagaacttgatcttgttagcaaatatcttattcaaagta |
260 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
17588993 |
gtaacaaggggtcttgagattatacaacaagcattgacaacagcgaacgatcccaatgagaaagaacttgatcttgttcgcaaatatcttattcaaagta |
17589092 |
T |
|
| Q |
261 |
aaggtgatgatgtcc |
275 |
Q |
| |
|
|||||| |||||||| |
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|
| T |
17589093 |
aaggtgttgatgtcc |
17589107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 256
Target Start/End: Original strand, 17582855 - 17583049
Alignment:
| Q |
67 |
aaacttgttagagaaaaatatggttgaaaaaatatatgatgaaaagttgatgcaacacctttttgctcttgttactcc----ct-aaatgtgtctgatag |
161 |
Q |
| |
|
||||||||| ||| |||| ||||| ||||||||| ||||| |||||| |||| | | || |||||||||| ||||||| || |||||||||| ||| |
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|
| T |
17582855 |
aaacttgtt-gaggaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcgcccttttgctcttattactcctctcctcaaatgtgtctattag |
17582953 |
T |
|
| Q |
162 |
taacaaggggtcttgagattatacaataag-cattgacaacaacgaacgatcccaatgagaaagaacttgatcttgttagcaaatatcttattcaa |
256 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||| || |||||||||||||||| |||||| |||||||||||| | |||||||||||||| |
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|
| T |
17582954 |
taacaagggatcttgagattatacaacaaaacattgacagcagcgaacgatcccaatgaaaaagaaattgatcttgttatcgaatatcttattcaa |
17583049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 17588751 - 17588779
Alignment:
| Q |
1 |
cactttaacatttcactctactacttttt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
17588751 |
cactttaacatttcactctactacttttt |
17588779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 6071373 - 6071330
Alignment:
| Q |
219 |
agaaagaacttgatcttgttagcaaatatcttattcaaagtaaa |
262 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
6071373 |
agaaggaacttaatcttgttagcaaatatcttattcaaggtaaa |
6071330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 14144327 - 14144289
Alignment:
| Q |
224 |
gaacttgatcttgttagcaaatatcttattcaaagtaaa |
262 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
14144327 |
gaacttgatcttgttagcgaatatcttattcaaggtaaa |
14144289 |
T |
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