View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_high_14 (Length: 338)
Name: NF1168_high_14
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 327
Target Start/End: Complemental strand, 36055445 - 36055148
Alignment:
| Q |
30 |
acacattcactgcattttcactgaaacaagaaataatatttgatacattcattttgcagttaaaaattgtgcaaagaaaagttaaaaattctcacaagaa |
129 |
Q |
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| T |
36055445 |
acacattcactgcattttcactgaaacaagaaataatgtttgatacattcattttgcagttaaaaattgtgcaaagaaaagttaaaaattctcacaagaa |
36055346 |
T |
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| Q |
130 |
ctataatttataaatatgttcgagatgaaaatgatatgcagggttttaaaccgtggttgtgttgcgattaacaataatgtttagaatcgcacgcgtaata |
229 |
Q |
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| T |
36055345 |
ctataatttataaatatgttcgagatgaaaatgatatgcagggttttaaaccgtggttgcgttgcgattaacaataatgtttagaatcgcacgcgtaata |
36055246 |
T |
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| Q |
230 |
gggtttaatcggcctcaattgttatcaagtagtcgtgatagaaacattagaggaataaaaaactttgatgtcgcagttcaaatcgcagtcgtagaata |
327 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36055245 |
gggtttaatcggcctcaattgcgatcaagtagtcgtgatagaaacattagaggaataaaaaactttgatgtcgcagttcaaatcgcagtcatagaata |
36055148 |
T |
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