View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1168_high_2 (Length: 712)

Name: NF1168_high_2
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1168_high_2
NF1168_high_2
[»] chr8 (1 HSPs)
chr8 (1-637)||(36523142-36523771)


Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 637
Target Start/End: Complemental strand, 36523771 - 36523142
Alignment:
Q  1 accatcagggaaggtgctatcataaacgtataatggagaagttccaatgtccccataaatgatccccaaactttgaaatgctaaactcaatgtccccaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36523771 accatcagggaaggtgctatcataaacgtataatggagaagttccaatgtccccataaatgatccccaaactttgaaatgctagactcaatgtccccaac 36523672  T
Q  101 cagcttgtctgctacaacagatatatcacagttattcaatgaatctgnnnnnnnnnnnnttatctcttataataaagaacggatatttataataatagtg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||            | ||||||||||||||||||||||||||||| |||||||||    
T  36523671 cagcttgtctgctacaacagatatatcacagttattcaatgaatctgaaaaaataaaaatgatctcttataataaagaacggatatttatgataatagtg 36523572  T
Q  201 aatacatggatgctttaatagtaatagttcgataaaatatcacttagaaatgcaaatcgacattcattgtatcaataaaacaa-gagtaatatacaaacc 299  Q
    ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  36523571 aatacatggatgctttaatagtaatagtttgataaaatgccacttagaaatgcaaatcgacattcattgtatcaataaaacaaagagtaacatacaaacc 36523472  T
Q  300 ttggatgcatggatgttattagctgaggaaacccttccagcctctaaacggagggaatcgacgtgaagatcatttggccatgaattcatgatgatggctt 399  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  36523471 ttggatgcatggatgttattagctgagggaacccttccagcctctaaacggagggaatcgacgtgaagatcatttggccatgaattcatgattacggctt 36523372  T
Q  400 ttgatcgttaagaaaagtattatattcagatttaatgtttcattcacaaagccaagcaaaacttttatattggccacctcaccgtgttttccgtaaacac 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36523371 ttgatcgttaagaaaagtattatattcagatttaatgtttcattcacaaagccaagcaaaacttttatcttggccacctcaccgtgttttccgtaaacac 36523272  T
Q  500 caactcacattttttttgtttaaaatgctaacacgtagtactcattgctttctcgnnnnnnnnnnnnnnnaccactgctttcttcatcattaaatcgtgc 599  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||||||||||               |||||    | |||||||||||||||||||    
T  36523271 caactcaaattttttttgtttaaaatgctaacacgt--tactcattgctttctcg--ttttttttttttaaccac----tccttcatcattaaatcgtgc 36523180  T
Q  600 aagcaaataatacctacttgatcaatgaacctatgcta 637  Q
    |||||||||||||||||||||||||||| | |||||||    
T  36523179 aagcaaataatacctacttgatcaatgagcatatgcta 36523142  T

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