View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_high_23 (Length: 238)
Name: NF1168_high_23
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_high_23 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0173 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 9092792 - 9092729
Alignment:
| Q |
175 |
caccaccgacttcgtctctgaacccctccgcttccaccaccaccacgaaaaaactctcatcttc |
238 |
Q |
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| T |
9092792 |
caccaccgacttcgtctctgaacccctccgcttccaccaccacgacgaaaaaactctcatcttc |
9092729 |
T |
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Target: scaffold0036 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 95737 - 95680
Alignment:
| Q |
175 |
caccaccgacttcgtctctgaacccctccgcttccaccaccaccacgaaaaaactctc |
232 |
Q |
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| T |
95737 |
caccaccggcttcgtctctgaaccacgccgcttacaccaccaccacgaaaaaactctc |
95680 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 22083581 - 22083638
Alignment:
| Q |
175 |
caccaccgacttcgtctctgaacccctccgcttccaccaccaccacgaaaaaactctc |
232 |
Q |
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| T |
22083581 |
caccaccggtttcgtctctgaaccactccagttccaccaccaccacgaaaaaactctc |
22083638 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 13011159 - 13011109
Alignment:
| Q |
175 |
caccaccgacttcgtctctgaacccctccgcttccaccaccaccacgaaaa |
225 |
Q |
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| T |
13011159 |
caccaccgaattcatctatgaaaccctccgcttccaccaccaccaggaaaa |
13011109 |
T |
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Target: scaffold0173 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 20140 - 20096
Alignment:
| Q |
175 |
caccaccgacttcgtctctgaacccctccgcttccaccaccacca |
219 |
Q |
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| T |
20140 |
caccaccgaattcatctatgaaaccctccgcttccaccaccacca |
20096 |
T |
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