View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1168_high_3 (Length: 567)
Name: NF1168_high_3
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 261 - 451
Target Start/End: Complemental strand, 5656585 - 5656395
Alignment:
| Q |
261 |
atatgcataagaaattgaaagcaaaaatagaaagagtagaaagaatctgaattgatgagtcaatggatacatgtacatgttgctattatagcaaccttag |
360 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5656585 |
atatgcataagatattgaaagcaaaaatagaaagagtagaaagaatctgaattgatgagtcaatggatacatgtacatgttgctattatagcagccttag |
5656486 |
T |
|
| Q |
361 |
ttggatgtatttcaacccttttgtttgttttcatgttgtggttttgtcatcacaaaaaagatcaaaagagatttgttgaatcaaatagctt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5656485 |
ttggatgtatttcaacccttttgtttgttttcatgttgtggttttgtcatcacaaaaaagatcaaaagagatttgttgaatcaaatagctt |
5656395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 5656820 - 5656632
Alignment:
| Q |
16 |
atgtcttgtaacggcaaaccaatttatcgttttttaatgagtgtttgtgggttcccataaactaaatgaaaaggaactgacaaagaatatgcactccaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5656820 |
atgtcttgtaacggcaaaccaatttatcgttttttaatgagtgtttgtgggttcccataaacaaaatgaaaaggaactgacaaagaatatgcactccaag |
5656721 |
T |
|
| Q |
116 |
---nnnnnnnnctcatgtgttacttttggttttggtaacaactcgattctgccacctttgattaatcaaaccttagtccacgcaaacaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5656720 |
aaaaaaaaaaactcatgtgttacttttggttttggtaacaactcgattctgccacctttgattaatcaaaccttagtccacgcaaacaa |
5656632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University