View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_high_5 (Length: 511)
Name: NF1168_high_5
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 30 - 502
Target Start/End: Complemental strand, 31938983 - 31938511
Alignment:
| Q |
30 |
ccttgcccttggatacacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccat |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938983 |
ccttgcccttggatacacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccat |
31938884 |
T |
|
| Q |
130 |
tctttagatgtagttgatgataatggctcaagctgagcttgtcctcattcatccatgtcttttccaccgttatcttgatttcattttcatttttaagcca |
229 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938883 |
tctttagatgtagttgatgatgatggctcaagctgagcttgtcctcattcatccatgtcttttccaccgttatcttgatttcattttcatttttaagcca |
31938784 |
T |
|
| Q |
230 |
agaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggtgatgattttgcaag |
329 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938783 |
agaatattcaggccatggaattgtatgaatgaatgttcgtacagctgatgacattattgatcatgatttaatattcacatttcggtgatgattttgcaag |
31938684 |
T |
|
| Q |
330 |
atttgatttatctgataacaaaaatatatggcaaatgggaatgtttaaaaacagtgattgattgaatgacacttcaactcctatactatttttcttgcta |
429 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
31938683 |
atttgatttatctgataacaaaaaaatatggcaaatgggaatgtttaaaaacagtgtttgattgaatgacacttcaactcctatactatttttcttgtta |
31938584 |
T |
|
| Q |
430 |
aattgaaagtattaagtttggtttaggaaaacagaacacaagctcttatttttatgtcaggcctcgcctttgt |
502 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938583 |
aattgaaagtattaagattggtttaggaaaacagaacacaagctcttatttttatgtcaggcctcgcctttgt |
31938511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 13535621 - 13535476
Alignment:
| Q |
30 |
ccttgcccttggatacacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccat |
129 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||||| |||| | |
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|
| T |
13535621 |
ccttgcccttggatacacattaggtttggctattctaggactttctgatgacaagcctttgacaactctcccatttaagtacccaagttgtcttgcccct |
13535522 |
T |
|
| Q |
130 |
tctttagatgtagttgatgataatggctcaagctgagcttgtcctc |
175 |
Q |
| |
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||||||||| |||||||||| ||| ||||| ||||||||||||| |
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|
| T |
13535521 |
tctttagatacagttgatgatgatgattcaagttgagcttgtcctc |
13535476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 13535049 - 13534969
Alignment:
| Q |
245 |
tggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggtgatgattttg |
325 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||| || |||||||| ||||||| || ||||||||||||| |
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|
| T |
13535049 |
tggaattgtatgattgaatgtttgtacaattgatgacattatttataatgatttatgattcacactttggtgatgattttg |
13534969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 32671582 - 32671548
Alignment:
| Q |
232 |
aatattcaggccctggaattgtatgaatgaatgtt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
32671582 |
aatattcaggccctggaattgtatgaatgaatgtt |
32671548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 9389336 - 9388971
Alignment:
| Q |
30 |
ccttgcccttggatacacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccat |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |
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|
| T |
9389336 |
ccttgcccttggatacacattaggtttagcaattctaggactctctgatgacagtcctttgacaactctcccctttaagtacccaagttgtctggcccgt |
9389237 |
T |
|
| Q |
130 |
tctttagatgtagttgatgataatggctcaagctgagcttgtcctcattcatccatgtcttttccaccgttatcttgatttcattttcatttttaagcca |
229 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
9389236 |
tctttagatgtagttgatgat---ggctcaagctgagcttgtcctcattaatccatgtcttttccaccgttattttgatttcattttcatttttaagcca |
9389140 |
T |
|
| Q |
230 |
agaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggtgatgattttgcaag |
329 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
9389139 |
agaatattcaagccctggaattgtatgaatgaatgtttgtacaactgatgacattatttataatgatttaatattcacatttcggtgatgattttgcaag |
9389040 |
T |
|
| Q |
330 |
atttgatttatctgataacaaaaatatatggcaaatgggaatgttt-aaaaacagtgattgattgaatgacactt |
403 |
Q |
| |
|
|||||||||| |||||| | |||||||||| | ||||||| |||||| |||||||||| |||||||||| |
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|
| T |
9389039 |
-----atttatctgaaaacaaaca-gtatggcaaatagaaatgtttgaaaaactgtgattgatttaatgacactt |
9388971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 19810358 - 19810430
Alignment:
| Q |
236 |
ttcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcaca |
308 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||| |||||| || |||| |||| ||||||| |
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|
| T |
19810358 |
ttcaggccctggaattgtatgattgaatgtttgtacaattgatgatattatttataatgacttaagattcaca |
19810430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 1337152 - 1336890
Alignment:
| Q |
30 |
ccttgcccttggatacacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccat |
129 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||| | |
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|
| T |
1337152 |
ccttgcccttggatacacattaggtttggcaattctaggacactccgatgacggtcctttgacaactctcccctttaagtaccctagttgtctagcccgt |
1337053 |
T |
|
| Q |
130 |
tctttagatgtagttgatgataatggctcaagctgagcttgtcctcattcatccatgtcttttccaccgttatcttgatttcattttcat---------- |
219 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||| ||| |||||||||||| |||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
1337052 |
cctttagatgtagttaatgatgatggttcaagttgatcttgtcctcattaatccatgtcttttcaaccgttatcttgttttcattttcatttttgttttc |
1336953 |
T |
|
| Q |
220 |
--ttttaagccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatga |
280 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1336952 |
atttttaagccaataatattcagggcctggaattgtatgaatgaatgttcctacaactgatga |
1336890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 403 - 502
Target Start/End: Complemental strand, 1336766 - 1336667
Alignment:
| Q |
403 |
tcaactcctatactatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacacaagctcttatttttatgtcaggcctcgcctttgt |
502 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||| |
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|
| T |
1336766 |
tcaattcctatactatttgtcttgttaaattgaaagtattaagtttggtttaggaaaacaaaacacaagctcatatttttacgtcaggccttgcctttgt |
1336667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 1336864 - 1336816
Alignment:
| Q |
355 |
atatggcaaatgggaatgtttaaaaacagtgattgattgaatgacactt |
403 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| | |||||||| |
|
|
| T |
1336864 |
atatggcaaatggaaatgtttaaaaactatgattgatttactgacactt |
1336816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 31 - 285
Target Start/End: Complemental strand, 5639242 - 5638984
Alignment:
| Q |
31 |
cttgcccttggatacacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccatt |
130 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||| ||||| ||||| |||| ||||||||||| ||||||||||||||| ||||||||||| |||| | |
|
|
| T |
5639242 |
cttgccctcggatacacattgggtttagcacttcaaggacgctctggggacaatcctttgacaactctcccctttaagtatccaagttgtcttgcccgtc |
5639143 |
T |
|
| Q |
131 |
ctttagatgtagttgatgataatggctcaagctgagcttgtcctcattcatccatgtcttttccaccgttatcttgattt----cattttcatttttaag |
226 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||| ||||||||||||| || || ||||||||||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
5639142 |
ctttagctgtagttgatgatgatggttcaagttgagcttgtcctcgttaattcatgtcttttccattgttatctttttttcttccattttcatttttaag |
5639043 |
T |
|
| Q |
227 |
ccaagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacatta |
285 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| ||||| | ||| ||||||||||| |
|
|
| T |
5639042 |
ccaagagcattcaggctctggaattgtatgaatggatgtttgttcaattgatgacatta |
5638984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 5638983 - 5638949
Alignment:
| Q |
299 |
aatattcacatttcggtgatgattttgcaagattt |
333 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
5638983 |
aatattcacacttcggtgatgattttgcaagattt |
5638949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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