View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1168_low_11 (Length: 453)
Name: NF1168_low_11
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 33 - 424
Target Start/End: Complemental strand, 4939504 - 4939104
Alignment:
| Q |
33 |
tagattcattgaataatcgatatatttgttctagaatattagacatgatatatctaattattcaatgaatttaaaaagataattgtttcttacttaattt |
132 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4939504 |
tagattcattgaataatcgatgtatttgttctagaatattagacatgatatatataattattcaatgaatttaaaaagataattgtttcttacttaattt |
4939405 |
T |
|
| Q |
133 |
cttttgttcctaatcacaaacccatgtggaaattttgaatttcgttcacatacagggttgctttgtttatgtgattgataatctaaaacctgaatgaaaa |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4939404 |
cttttgttcctaatcacaaacccatgtggaaattttgaatttcgttcacatacagggttgctttgtttatgtgattgataatctaaaacctgaatgaaaa |
4939305 |
T |
|
| Q |
233 |
acaagtacttagtgggacattgctga---ccacaaaaataaggctttaacttccttgtatgatgagatgtgcgtgttacagttgcttggc------ttgc |
323 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4939304 |
acaagtacttagtgggacattgctgaccaccacaaaaataaggctttaacttccttgtatgatgagatgtgcgtgttacagttgcttggcttgcggttgc |
4939205 |
T |
|
| Q |
324 |
ggacatgcctttttggggagaggaggggagtgatgcaagtggtaatgacgttaactctttccttagatattattgattctgaaggtgatggatttagata |
423 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4939204 |
ggacatgcctttttggggagaggaggggagtgatgtaagtggtaatgacgttaactctttccttagatattattgattctgaaggtgatggatttggata |
4939105 |
T |
|
| Q |
424 |
c |
424 |
Q |
| |
|
| |
|
|
| T |
4939104 |
c |
4939104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 6604413 - 6604450
Alignment:
| Q |
87 |
taattattcaatgaatttaaaaagataattgtttctta |
124 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
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|
| T |
6604413 |
taattattcaatgaatttaaaaagtcaattgtttctta |
6604450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 32902859 - 32902896
Alignment:
| Q |
87 |
taattattcaatgaatttaaaaagataattgtttctta |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
32902859 |
taattattcaatgaatttaaaaagacaattttttctta |
32902896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 16412273 - 16412311
Alignment:
| Q |
33 |
tagattcattgaataatcgatatatttgttctagaatat |
71 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
16412273 |
tagattcattgaataattgatatatttggtctagaatat |
16412311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 22210846 - 22210809
Alignment:
| Q |
87 |
taattattcaatgaatttaaaaagataattgtttctta |
124 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22210846 |
taattattcaatgaatttaaaaagtcaattgtttctta |
22210809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 9373485 - 9373522
Alignment:
| Q |
87 |
taattattcaatgaatttaaaaagataattgtttctta |
124 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
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|
| T |
9373485 |
taattattcaatgaatttaaaaagtcaattgtttctta |
9373522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 19512787 - 19512751
Alignment:
| Q |
88 |
aattattcaatgaatttaaaaagataattgtttctta |
124 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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|
| T |
19512787 |
aattattcaatgaatttaaaaagtcaattgtttctta |
19512751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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