View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_low_12 (Length: 440)
Name: NF1168_low_12
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33795018 - 33795254
Alignment:
| Q |
1 |
cttatatataagtgtaaagtgtgttaacactatatatgtattgttaagactcaaaaagtgtggtatattccatgcgaaacacacaatgaatcataatcat |
100 |
Q |
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| T |
33795018 |
cttatatataagtgtaaagtgtgtgaacactatatatgtattgttaagactcaaaaagtgtggtatattccatgtgaaacacacaatgaatcataatcat |
33795117 |
T |
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| Q |
101 |
aggctttatgtgatatcatggggttgttaaagatgtttttgtgattggctttcatttgtttgnnnnnnnnnnccttttccaattttggagaagattgtga |
200 |
Q |
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| T |
33795118 |
aggctttatgtgatatcatggggttgttaaagatgtttttgtgattggctttcatttgtttgtttttttttt-cttttccaattttggagaagattgtga |
33795216 |
T |
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| Q |
201 |
tggagaggtccaatttgccatgataatactcgttcccc |
238 |
Q |
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| T |
33795217 |
tggagaggtccaatttgccatgataatactcgttcccc |
33795254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 296 - 437
Target Start/End: Original strand, 33795312 - 33795453
Alignment:
| Q |
296 |
gatgtcactttgttggccattgtcgggttatgtttacacccttttctatataaatatttgtccctgcccgtgaagggacttaatatttaatatacactat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33795312 |
gatgtcactttgttggccattgtcgggttatgtttacacccttttctatataaatatttgtccctgcccgtgaagggacttaatatttaatatacactat |
33795411 |
T |
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| Q |
396 |
agggcatgtggggatcgaattgtgggtcattttgttggagat |
437 |
Q |
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| T |
33795412 |
agggcatgtggggatcgaattgtgggtcatttttttgtagat |
33795453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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