View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1168_low_16 (Length: 428)

Name: NF1168_low_16
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1168_low_16
NF1168_low_16
[»] chr5 (8 HSPs)
chr5 (1-354)||(17589006-17589359)
chr5 (100-292)||(17583110-17583303)
chr5 (1-138)||(17582966-17583104)
chr5 (51-200)||(38233339-38233488)
chr5 (46-199)||(22887903-22888056)
chr5 (135-200)||(25606618-25606683)
chr5 (159-201)||(16469521-16469563)
chr5 (247-279)||(39850396-39850428)
[»] chr7 (3 HSPs)
chr7 (1-354)||(14737426-14737772)
chr7 (100-291)||(14744009-14744200)
chr7 (31-138)||(14744216-14744323)
[»] chr8 (4 HSPs)
chr8 (48-200)||(35066161-35066313)
chr8 (121-200)||(23237972-23238051)
chr8 (238-279)||(4438288-4438329)
chr8 (239-279)||(16337999-16338039)
[»] chr3 (4 HSPs)
chr3 (51-200)||(27521763-27521912)
chr3 (51-200)||(27522653-27522802)
chr3 (123-180)||(23688147-23688204)
chr3 (123-180)||(24060384-24060441)
[»] chr1 (4 HSPs)
chr1 (52-197)||(2750124-2750269)
chr1 (111-200)||(10057665-10057754)
chr1 (239-279)||(42560989-42561029)
chr1 (239-279)||(40368064-40368104)
[»] chr6 (2 HSPs)
chr6 (52-202)||(6891397-6891544)
chr6 (46-107)||(6071312-6071373)
[»] chr4 (2 HSPs)
chr4 (46-166)||(7705385-7705505)
chr4 (59-189)||(22119305-22119435)
[»] chr2 (4 HSPs)
chr2 (111-182)||(22829899-22829970)
chr2 (240-301)||(11852669-11852729)
chr2 (121-169)||(28594677-28594725)
chr2 (51-89)||(14144289-14144327)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 17589006 - 17589359
Alignment:
Q  1 ttgagattatacaataagcattgacaacaacgaacgatcccaatgagaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgt 100  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17589006 ttgagattatacaacaagcattgacaacagcgaacgatcccaatgagaaagaacttgatcttgttcgcaaatatcttattcaaagtaaaggtgttgatgt 17589105  T
Q  101 cccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17589106 cccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 17589205  T
Q  201 gagccttttcttagagggggccaaatcgttttgaacgtatgacaccaacaataaaacattattatagacaaatttgtttcaatggtataactataagtga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||    
T  17589206 gagccttttcttagagggggccaaatcgttttgaacgtatgacaccaacaataaaacattgttatagacaaatttgtttcaatggtataactgaaagtga 17589305  T
Q  301 ataagtcactcaaaacaacatatttcctttatatataactagtgtcccacaggt 354  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17589306 acaagtcactcaaaacaacatatttcctttatatataactagtgtcccacaggt 17589359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 17583110 - 17583303
Alignment:
Q  100 tcccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaaccc-aatggtggttgag 198  Q
    ||||||||| |||| || || |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||||||||    
T  17583110 tcccttttacacctaattggacgaagaagcagaagaaacaaatcaaccaactcaattcccacaacactcgatccaaacgtgaacccaaagggtggttgag 17583209  T
Q  199 cagagccttttcttagagggggccaaatcgttttgaacgtatgacaccaacaataaaacattattatagacaaatttgtttcaatggtataact 292  Q
    ||   | |||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||| ||||| |  |||||||||||| |||||||||    
T  17583210 caagacattttcttagaaggggccaaatctttttgaacgaatgacaccaacaatacaacattcttataaaataatttgtttcaagggtataact 17583303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17582966 - 17583104
Alignment:
Q  1 ttgagattatacaataag-cattgacaacaacgaacgatcccaatgagaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatg 99  Q
    |||||||||||||| ||  |||||||| || |||||||||||||||| |||||| |||||||||||| | |||||||||||||| | |||| ||||| ||    
T  17582966 ttgagattatacaacaaaacattgacagcagcgaacgatcccaatgaaaaagaaattgatcttgttatcgaatatcttattcaaggcaaagatgttgttg 17583065  T
Q  100 tcccttttataccttatcgggcgaagaagtagaagaaac 138  Q
    |||||||||| ||||||||| | |||||  |||||||||    
T  17583066 tcccttttatgccttatcggacaaagaaccagaagaaac 17583104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 38233339 - 38233488
Alignment:
Q  51 gaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaac 150  Q
    |||||||||||||||||  ||| ||||||| || || ||| |||||| ||||| ||||  ||||||| | |||||||| ||| ||||||| | |  ||||    
T  38233339 gaacttgatcttgttagagaatgtcttattaaaggtgaagatgttgaggtcccctttacgccttatctgacgaagaagcagaggaaacaactaagtaaac 38233438  T
Q  151 tcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 200  Q
    ||||| ||||||||||||| ||||| |||| |||||| || |||||||||    
T  38233439 tcaattcctacaacactcgttccaagggtgcacccaagggcggttgagca 38233488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 22888056 - 22887903
Alignment:
Q  46 agaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagtagaagaaacaaatcaa 145  Q
    |||| |||||||||||||| || ||||||||||||| | |||||| ||||||  || ||||||  ||||||  | ||| |||| ||||| ||||| ||      
T  22888056 agaaggaacttgatcttgtaaggaaatatcttattcgaggtaaagatgttgacatctcttttacgccttatttgacgatgaagcagaagtaacaactctc 22887957  T
Q  146 caaactcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagc 199  Q
    ||||| |||  ||||||||||||| ||||| ||||||  ||| |||||||||||    
T  22887956 caaacacaactcctacaacactcggtccaagggtgaattcaagggtggttgagc 22887903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 25606683 - 25606618
Alignment:
Q  135 aaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 200  Q
    |||||| |||||||| | ||||||||||||||||||||||| ||||||||||| |  |||||||||    
T  25606683 aaacaactcaacaaatttaatccctacaacactcgatccaagggtgaacccaaggacggttgagca 25606618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 16469563 - 16469521
Alignment:
Q  159 tacaacactcgatccaaaggtgaacccaatggtggttgagcag 201  Q
    ||||||||||||||||| || |||||||| |||||||||||||    
T  16469563 tacaacactcgatccaagggggaacccaagggtggttgagcag 16469521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 39850428 - 39850396
Alignment:
Q  247 aacaataaaacattattatagacaaatttgttt 279  Q
    ||||||| |||||||||||||||||||||||||    
T  39850428 aacaatataacattattatagacaaatttgttt 39850396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 14737772 - 14737426
Alignment:
Q  1 ttgagattatacaataagcattgacaacaacgaacgatcccaatgagaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgt 100  Q
    |||||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737772 ttgagattatacaacaagcattgacaacagcggacgatcctaatgagaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgt 14737673  T
Q  101 cccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 200  Q
    ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737672 cccttttatacc-----gggcgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 14737578  T
Q  201 gagccttttcttagagggggccaaatcgttttgaacgtatgacaccaacaataaaacattattatagacaaatttgtttcaatggtataactataagtga 300  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14737577 gagccttttcttagagggggccaaatcgtt--gaacgtatgacaccaacaataaaacattattatagacaaatttgtttcaatggtataactgtaagtga 14737480  T
Q  301 ataagtcactcaaaacaacatatttcctttatatataactagtgtcccacaggt 354  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737479 acaagtcactcaaaacaacatatttcctttatatataactagtgtcccacaggt 14737426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 100 - 291
Target Start/End: Complemental strand, 14744200 - 14744009
Alignment:
Q  100 tcccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaaccc-aatggtggttgag 198  Q
    ||||||||| |||| || || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||    
T  14744200 tcccttttacacctaattggacgaagaagcagaagaaacaaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgag 14744101  T
Q  199 cagagccttttcttagagggggccaaatcgttttgaacgtatgacaccaacaataaaacattattatagacaaatttgtttcaatggtataac 291  Q
    ||   | |||||||||| ||||||||||| ||||||||  ||||||||||||||| |||||| ||||| |  |||||||||||| ||||||||    
T  14744100 caagacattttcttagaaggggccaaatctttttgaac-aatgacaccaacaatacaacattcttataaaataatttgtttcaagggtataac 14744009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 14744323 - 14744216
Alignment:
Q  31 cgaacgatcccaatgagaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagta 130  Q
    |||||||||||||||| |||||| |||||||||||| | |||||||||||||| |||||| ||||| |||||||||||| ||||||||| |||||||  |    
T  14744323 cgaacgatcccaatgaaaaagaaattgatcttgttatcgaatatcttattcaaggtaaagatgttgttgtcccttttatgccttatcggacgaagaacca 14744224  T
Q  131 gaagaaac 138  Q
    ||||||||    
T  14744223 gaagaaac 14744216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 48 - 200
Target Start/End: Complemental strand, 35066313 - 35066161
Alignment:
Q  48 aaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagtagaagaaacaaatcaaca 147  Q
    ||||||||||||||||||||  |||||||| ||||| |||||| |||||| ||||||||||  ||||||| | |||||||| | ||||||||||| |  |    
T  35066313 aaagaacttgatcttgttagagaatatcttcttcaaggtaaagatgttgacgtcccttttacgccttatccgacgaagaagcaaaagaaacaaattagta 35066214  T
Q  148 aactcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 200  Q
    |||||||| |||||||||||||||||||   ||||||||| |  |||||||||    
T  35066213 aactcaattcctacaacactcgatccaagaatgaacccaaggacggttgagca 35066161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 23237972 - 23238051
Alignment:
Q  121 cgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 200  Q
    |||| ||| ||||||||||| |||||||| |||||  |||||||||| |||| ||| |||||| ||| ||||||||||||    
T  23237972 cgaataagcagaagaaacaactcaacaaattcaattactacaacactagatctaaacgtgaacacaagggtggttgagca 23238051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 4438329 - 4438288
Alignment:
Q  238 tatgacaccaacaataaaacattattatagacaaatttgttt 279  Q
    |||||||||||||||| |||||||||||| | ||||||||||    
T  4438329 tatgacaccaacaatataacattattataaaaaaatttgttt 4438288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 16338039 - 16337999
Alignment:
Q  239 atgacaccaacaataaaacattattatagacaaatttgttt 279  Q
    ||||||||||||||| | |||| ||||||||||||||||||    
T  16338039 atgacaccaacaatatatcattcttatagacaaatttgttt 16337999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 27521763 - 27521912
Alignment:
Q  51 gaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaac 150  Q
    ||||||||| ||||||  ||||||||||||||| | |||| |||  | ||||| ||||  ||||||| | | ||||||  ||||||| || | |||||||    
T  27521763 gaacttgatattgttactaaatatcttattcaatggaaagatgtctacgtcccatttacgccttatccgacaaagaagctgaagaaaaaactaaacaaac 27521862  T
Q  151 tcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 200  Q
    ||||| ||||||||||||||||||||| | ||||||| || |||||||||    
T  27521863 tcaattcctacaacactcgatccaaagataaacccaaaggcggttgagca 27521912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 27522653 - 27522802
Alignment:
Q  51 gaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaac 150  Q
    ||||||||| ||||||  ||||||||||||||| | |||| |||  | ||||| ||||  ||||||| | | ||||||  ||||||| || | |||||||    
T  27522653 gaacttgatattgttactaaatatcttattcaatggaaagatgtctacgtcccatttacgccttatccgacaaagaagctgaagaaaaaactaaacaaac 27522752  T
Q  151 tcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 200  Q
    ||||| ||||||||||||||||||||| | ||||||| || |||||||||    
T  27522753 tcaattcctacaacactcgatccaaagataaacccaaaggcggttgagca 27522802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 23688147 - 23688204
Alignment:
Q  123 aagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtg 180  Q
    ||||||||||  |||||| |||||||| ||||| ||||||||||||||||||||||||    
T  23688147 aagaagtagacaaaacaagtcaacaaattcaattcctacaacactcgatccaaaggtg 23688204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 24060384 - 24060441
Alignment:
Q  123 aagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtg 180  Q
    ||||||||||  |||||| |||||||| ||||| ||||||||||||||||||||||||    
T  24060384 aagaagtagacaaaacaagtcaacaaattcaattcctacaacactcgatccaaaggtg 24060441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 2750269 - 2750124
Alignment:
Q  52 aacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaact 151  Q
    |||| ||||||||| || |||||||||||| | |||||  ||||||  | ||||||| |||||||| |  ||||||| | ||||||||| ||  ||||||    
T  2750269 aactagatcttgtttgcgaatatcttattcgaggtaaaaatgttgacattccttttacaccttatccgatgaagaagcataagaaacaactctccaaact 2750170  T
Q  152 caatccctacaacactcgatccaaaggtgaacccaatggtggttga 197  Q
    |||| | |||||||||| |||||| ||||||||||| || ||||||    
T  2750169 caattcttacaacactcaatccaagggtgaacccaagggaggttga 2750124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 10057754 - 10057665
Alignment:
Q  111 ccttatcgggcgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatggtggttgagca 200  Q
    ||||||| | ||||||||||||||||||||  ||| ||| ||||| |||| |||||||| | ||||||||||||||| ||||||||||||    
T  10057754 ccttatctgacgaagaagtagaagaaacaacccaagaaaatcaattcctataacactcgtttcaaaggtgaacccaaaggtggttgagca 10057665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 42560989 - 42561029
Alignment:
Q  239 atgacaccaacaataaaacattattatagacaaatttgttt 279  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  42560989 atgacaccaacaatataacattattatagaaaaatttgttt 42561029  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 40368104 - 40368064
Alignment:
Q  239 atgacaccaacaataaaacattattatagacaaatttgttt 279  Q
    ||||||||||||||| ||||||| |||||| ||||||||||    
T  40368104 atgacaccaacaatataacattaatatagaaaaatttgttt 40368064  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 6891397 - 6891544
Alignment:
Q  52 aacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaact 151  Q
    ||||||||||| ||  | |||||||||||||| |||||| |||||||||| | |||| | |||||| | | |||||| ||||||||||| | || |||||    
T  6891397 aacttgatcttattcccgaatatcttattcaaggtaaagatgttgatgtcgcctttacatcttatctgacaaagaagcagaagaaacaactaaataaact 6891496  T
Q  152 caatccctacaacactcgatccaaaggtgaacccaatggtggttgagcaga 202  Q
    |||| | |||||   ||||||||| ||||||||||| |  |||||||||||    
T  6891497 caattcatacaa---tcgatccaagggtgaacccaaggacggttgagcaga 6891544  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 6071373 - 6071312
Alignment:
Q  46 agaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtccctttt 107  Q
    |||| |||||| |||||||||||||||||||||||||| |||||  ||||||  ||||||||    
T  6071373 agaaggaacttaatcttgttagcaaatatcttattcaaggtaaaaatgttgacatccctttt 6071312  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 166
Target Start/End: Original strand, 7705385 - 7705505
Alignment:
Q  46 agaaagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagtagaagaaacaaatcaa 145  Q
    |||| ||||||||||| |||||  |||||| ||||||| ||||   |||||||||||| |||| |||||||| | |||||||| |||||||| || | |     
T  7705385 agaaggaacttgatctagttagagaatatcctattcaaggtaactatgttgatgtcccctttacaccttatccgacgaagaagcagaagaaataatttag 7705484  T
Q  146 caaactcaatccctacaacac 166  Q
     ||||||||| ||||||||||    
T  7705485 taaactcaatgcctacaacac 7705505  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 22119305 - 22119435
Alignment:
Q  59 tcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcccttttataccttatcgggcgaagaagtagaagaaacaaatcaacaaactcaatccc 158  Q
    ||||||||| |||||||||||||||  ||||| ||| || ||||||||||  | |||||    ||||||   |||||||||| | |||||||||||| ||    
T  22119305 tcttgttagaaaatatcttattcaagataaagatgtcgacgtcccttttaagcgttatctaatgaagaatcggaagaaacaactaaacaaactcaattcc 22119404  T
Q  159 tacaacactcgatccaaaggtgaacccaatg 189  Q
    ||||||| ||||||||| || |||| |||||    
T  22119405 tacaacattcgatccaagggcgaactcaatg 22119435  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 22829899 - 22829970
Alignment:
Q  111 ccttatcgggcgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcgatccaaaggtgaa 182  Q
    ||||||| | ||||||||||||||||| || ||| |||||| ||| |||| |||||||||||||||||||||    
T  22829899 ccttatctgccgaagaagtagaagaaataactcatcaaactgaattcctataacactcgatccaaaggtgaa 22829970  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 11852669 - 11852729
Alignment:
Q  240 tgacaccaacaataaaacattattatagacaaatttgtttcaatggtataactataagtgaa 301  Q
    |||||||||||||| |||||| |||||||||||||||||| || |||||||||  |||||||    
T  11852669 tgacaccaacaatataacatttttatagacaaatttgttt-aacggtataactggaagtgaa 11852729  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 28594725 - 28594677
Alignment:
Q  121 cgaagaagtagaagaaacaaatcaacaaactcaatccctacaacactcg 169  Q
    |||||||||||||||||||| |||| ||| ||||| |||||||||||||    
T  28594725 cgaagaagtagaagaaacaactcaataaagtcaatacctacaacactcg 28594677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 14144327 - 14144289
Alignment:
Q  51 gaacttgatcttgttagcaaatatcttattcaaagtaaa 89  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  14144327 gaacttgatcttgttagcgaatatcttattcaaggtaaa 14144289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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