View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_low_17 (Length: 407)
Name: NF1168_low_17
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_17 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 119 - 386
Target Start/End: Original strand, 45581 - 45848
Alignment:
| Q |
119 |
cacagatgacccaaaggaacttggtaagtgcgttataaaatccatagatagatctatccacacttgttgagggattggtaatggtttgagtaacccctgt |
218 |
Q |
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| T |
45581 |
cacagatgacccaaaggaacttggtaagtgcgttataaaatccatagatagatctatccacacttgttgagggattggtaatggtttgagtaacccctgt |
45680 |
T |
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| Q |
219 |
tttttggttggcatgtacttactcttatggaaaatttcgcacctaaggacccagtgtttgatatctttataggcatatggttaaagaaacgatgcggcca |
318 |
Q |
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| T |
45681 |
ttcttggttggcatttacttactcttctgaaaaatttcgcacctgaggacccaatgtttcacatctttataggcatctggtcaaagaaacgatgcggcca |
45780 |
T |
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| Q |
319 |
ttctggatagagttggctggagactggagtgtcctgaaagaggtgtgtcatgaaactctttgatgatg |
386 |
Q |
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| T |
45781 |
ttctggctagagttggctggagactggagtgtcctgaaagaggtgtgtcatgaaactctttgatgatg |
45848 |
T |
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Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 23522379 - 23522484
Alignment:
| Q |
10 |
atgaaggagtggggccaaaaggttgggtacgtgagagatattgatggcatcgtgatcagaatgggaaatcatgtaaagcctgcaaaattagattagttat |
109 |
Q |
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| T |
23522379 |
atgaaggagtggggccaaaaggttgggtacgtgagagatattgatggcatcgtgatcagaatgggaaatcatgtaaagcctgcaaaattagattagttat |
23522478 |
T |
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| Q |
110 |
gagcag |
115 |
Q |
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| T |
23522479 |
gtgcag |
23522484 |
T |
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