View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1168_low_24 (Length: 320)
Name: NF1168_low_24
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1168_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 30 - 311
Target Start/End: Original strand, 28594276 - 28594554
Alignment:
| Q |
30 |
aaatgtgtgtgggactcaacaatatgatctatatgaagtcagtagctataagcaaattagtatacgatagaaatgacattgttactgacatcacttag-n |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28594276 |
aaatgtgtgtgggactcaacaatatgatctatatgaagtcagtagctataagcaaattagtatacgatagaaatgacattgttactgacatcacttagaa |
28594375 |
T |
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| Q |
129 |
nnnnnnnnnnnnnnnnngtcaagatcgaggtgctagattttatccattttatttatgttgttatccttaaattcnnnnnnnnnnnncttctaataagcta |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
28594376 |
aaaaaagaaaaaaaaaagtcaagatcgaggtgctagattttatccattttatttatgtggttatccttaaattc----ttttttttcttctaataagctt |
28594471 |
T |
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| Q |
229 |
ggagaaaggacaaacatcaagagagaacttagacatcccaactaagttgttagatatcttcgagaaacctctctatcctatgc |
311 |
Q |
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||||||||||||| ||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28594472 |
ggagaaaggacaagcattaagagaaaactcagacatctcaactaagttgttagatatcttcgagaaacctctctatcctatgc |
28594554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 26916721 - 26916665
Alignment:
| Q |
221 |
ataagctaggagaaaggacaaacatcaagagagaacttagacatcccaactaagttg |
277 |
Q |
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|||||| |||||||||||||||||||| |||| | | | ||||||||||||| |||| |
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| T |
26916721 |
ataagcaaggagaaaggacaaacatcaggagacatcgtcgacatcccaactaggttg |
26916665 |
T |
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