View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1168_low_25 (Length: 318)

Name: NF1168_low_25
Description: NF1168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1168_low_25
NF1168_low_25
[»] chr4 (46 HSPs)
chr4 (201-318)||(27414851-27414968)
chr4 (99-199)||(27415648-27415748)
chr4 (99-195)||(27425843-27425939)
chr4 (99-197)||(27412693-27412791)
chr4 (99-184)||(27475592-27475677)
chr4 (99-184)||(27503964-27504049)
chr4 (99-195)||(27570062-27570158)
chr4 (106-197)||(27527190-27527281)
chr4 (99-197)||(27497335-27497433)
chr4 (99-176)||(27524574-27524651)
chr4 (99-196)||(27563359-27563456)
chr4 (106-199)||(27585715-27585808)
chr4 (99-191)||(27420443-27420535)
chr4 (99-195)||(27423253-27423349)
chr4 (99-199)||(27565964-27566064)
chr4 (99-184)||(27468340-27468425)
chr4 (99-184)||(27514933-27515018)
chr4 (99-176)||(27508902-27508979)
chr4 (99-182)||(27490004-27490087)
chr4 (103-197)||(27498444-27498538)
chr4 (201-268)||(27425144-27425211)
chr4 (99-190)||(27478896-27478987)
chr4 (99-190)||(27485956-27486047)
chr4 (103-197)||(27487012-27487106)
chr4 (103-197)||(27506727-27506821)
chr4 (112-197)||(27431174-27431259)
chr4 (103-197)||(27501346-27501440)
chr4 (103-197)||(27557518-27557612)
chr4 (103-184)||(27411473-27411554)
chr4 (112-171)||(27554364-27554423)
chr4 (103-197)||(27444811-27444905)
chr4 (103-197)||(27513793-27513887)
chr4 (99-197)||(17970328-17970426)
chr4 (103-197)||(27424531-27424625)
chr4 (103-197)||(27479930-27480024)
chr4 (103-161)||(27502824-27502882)
chr4 (103-197)||(27526129-27526223)
chr4 (103-184)||(27567297-27567378)
chr4 (103-197)||(27414321-27414415)
chr4 (103-197)||(27469489-27469583)
chr4 (103-197)||(27505719-27505813)
chr4 (102-199)||(27500354-27500451)
chr4 (106-199)||(27516629-27516722)
chr4 (103-199)||(27460505-27460601)
chr4 (103-199)||(27473919-27474015)
chr4 (103-199)||(27556396-27556492)
[»] chr5 (2 HSPs)
chr5 (99-197)||(1756770-1756868)
chr5 (99-195)||(1754719-1754815)
[»] chr3 (12 HSPs)
chr3 (99-197)||(38043932-38044030)
chr3 (99-197)||(55084815-55084913)
chr3 (100-197)||(50911883-50911980)
chr3 (99-197)||(38024888-38024986)
chr3 (99-197)||(38031340-38031438)
chr3 (99-197)||(50909989-50910087)
chr3 (99-199)||(38028779-38028879)
chr3 (99-199)||(48840725-48840824)
chr3 (99-177)||(50904805-50904883)
chr3 (112-197)||(38033805-38033890)
chr3 (99-199)||(38040094-38040194)
chr3 (99-190)||(38036806-38036897)
[»] chr8 (3 HSPs)
chr8 (99-197)||(21607309-21607407)
chr8 (113-164)||(21634605-21634656)
chr8 (99-199)||(21604767-21604867)
[»] chr2 (1 HSPs)
chr2 (99-197)||(3073598-3073696)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 27414968 - 27414851
Alignment:
Q  201 cacatatatatgatgtatttagcaggtatatgtatattagttgccttgtcatttagaagaaagatgtgggaacaaacatattggattagctatagcaaca 300  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27414968 cacatatatgtgatgtatttagcaggtatatgtatattagttgccttgtcatttagaagaaagatgtgggaacaaacatattggattagctatagcaaca 27414869  T
Q  301 aacatcaagtttctttca 318  Q
    ||||||||||||||||||    
T  27414868 aacatcaagtttctttca 27414851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 27415748 - 27415648
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaat 198  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27415748 gaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagtatgatatggggatcacaaat 27415649  T
Q  199 c 199  Q
    |    
T  27415648 c 27415648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 27425939 - 27425843
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcaca 195  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||    
T  27425939 gaggccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatggttggttcaagtatgatattgggatcaca 27425843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 27412791 - 27412693
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||  |||||||||||||| ||||||| |||||||||||    
T  27412791 gaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatattgggatcacaaa 27412693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 27475592 - 27475677
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgata 184  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||| ||||||    
T  27475592 gaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 27504049 - 27503964
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgata 184  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||    
T  27504049 gaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 27570062 - 27570158
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcaca 195  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||| | ||| |||||| ||||||||||    
T  27570062 gaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaatgaaggttggcttaagtatgatacggggatcaca 27570158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 27527281 - 27527190
Alignment:
Q  106 cccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||  |||||| |||||||||||    
T  27527281 cccatgggatgatcatatccaaactcttcctcagcttgactcagcaactctagaaacgatggttggtttaagtgtgatattgggatcacaaa 27527190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 27497335 - 27497433
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| ||| |||| || |||||||||||    
T  27497335 gaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatattgaaacaatggttggtttaagtatgagatagggatcacaaa 27497433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 27524651 - 27524574
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaa 176  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||    
T  27524651 gaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtcttgaaatgaaggttggttcaa 27524574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 27563359 - 27563456
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaa 196  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||| ||| ||||||||| ||| |||||||||| |||||| |||||||||||    
T  27563359 gaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgatacggggatcacaa 27563456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 27585808 - 27585715
Alignment:
Q  106 cccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaatc 199  Q
    ||||| ||||||||||||||||||||||| || |||||||||| ||| ||||||||| |||||||||||||| |||||| ||||||||||||||    
T  27585808 cccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttgaaacaatggttggttcaagtatgatacggggatcacaaatc 27585715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 27420535 - 27420443
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggat 191  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| || |||||| ||||| |||||| ||||||    
T  27420535 gaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagccttgaaatgaaggttggctcaagtatgatacggggat 27420443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 27423349 - 27423253
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcaca 195  Q
    ||||||||||||||||||||  || |||||||||||||| |||||||||||||| |||||||| || |||||||||||| |||||||| ||||||||    
T  27423349 gaggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattcttgaaatgaaggttggttcaagtatgatatgcggatcaca 27423253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 27565964 - 27566064
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaat 198  Q
    |||||||||||| |||||||||||||||  |||||||||| ||||  ||| ||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  27565964 gaggccacccattggatgatcatatccatgctcttcctcaacttgtatcagcaagtcttgaaacaatggttggttcaggtatgatatggggatcacaaat 27566063  T
Q  199 c 199  Q
    |    
T  27566064 c 27566064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 27468340 - 27468425
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgata 184  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| || |||||||| ||| ||||||    
T  27468340 gaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttggtttaagtatgata 27468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 27515018 - 27514933
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgata 184  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| || ||||| |||||| ||||||    
T  27515018 gaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 27508979 - 27508902
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaa 176  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||    
T  27508979 gaggccacccgttggatgatcatatccaaactcttcctcagcctgattcaacaagtcttgaaatgaaggttggttcaa 27508902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 27490087 - 27490004
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatga 182  Q
    |||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||| ||| ||| ||||    
T  27490087 gaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaatgatggtttgtttaagtatga 27490004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 27498538 - 27498444
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| |||||||||||| | || | |||||| |||||  ||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  27498538 ccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtcttggaacgatggttggttcaagtatgatatagggatcacaaa 27498444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 27425211 - 27425144
Alignment:
Q  201 cacatatatatgatgtatttagcaggtatatgtatattagttgccttgtcatttagaagaaagatgtg 268  Q
    |||||| ||||||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  27425211 cacataaatatgatttatttagctggtatatgtatattagtttccttgtcaattagaagaaagatgtg 27425144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 27478896 - 27478987
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatgggga 190  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||   | ||| ||||||||| |||||||||||||| ||||||| ||||    
T  27478896 gaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatattggga 27478987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 27485956 - 27486047
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatgggga 190  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||   | ||| ||||||||| |||||||||||||| ||||||| ||||    
T  27485956 gaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatattggga 27486047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 27487106 - 27487012
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| |||||||||||| |||| | ||| ||||||||  ||||||| |||||||||||||||||||| ||| ||||||  |||||||||||    
T  27487106 ccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggttggtttaagtatgataaagggatcacaaa 27487012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 27506821 - 27506727
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||||||||||||||||||| ||||| || ||||||   | ||| ||||||||| |||||||||| ||| ||||||| |||||||||||    
T  27506821 ccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatattgggatcacaaa 27506727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 27431174 - 27431259
Alignment:
Q  112 ggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    ||||| ||||||||||| | |||||| |||||| ||||||| |||||||| || |||||||||||| ||||||| |||||||||||    
T  27431174 ggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcacaaa 27431259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 27501440 - 27501346
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||| | |||||||| ||| |||| | |||||| |||||  ||||||||||||||||| |||||||||| ||| ||||||| |||||||||||    
T  27501440 ccacccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttgaaacaatggttggtttaagtatgatattgggatcacaaa 27501346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 27557612 - 27557518
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| |||||| ||||| |||| | ||||||||||||| ||| ||| |||||||| ||||||||||| ||| |||| || |||||||||||    
T  27557612 ccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggttggtttaagtatgacattgggatcacaaa 27557518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 27411473 - 27411554
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgata 184  Q
    |||||||| ||||||||||||||||| ||||| || |||||| | |  || |||||||||||||||||||||||| ||||||    
T  27411473 ccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgata 27411554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 27554423 - 27554364
Alignment:
Q  112 ggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttgg 171  Q
    ||||||||||||||||| | ||||||||||||| ||| ||| ||||||||||||||||||    
T  27554423 ggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaacgatggttgg 27554364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 27444811 - 27444905
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| ||||| |||||||| || | |||||| |||||| |||| || |||||||| |||| |||| ||||| ||||||| |||||||||||    
T  27444811 ccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatattgggatcacaaa 27444905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 27513793 - 27513887
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| |||||||||||| || | | ||| ||||||||  ||||||| ||||| ||||| | |||||||||| ||||||| |||||||||||    
T  27513793 ccacccattggatgatcatattcatattgttcttcagcttggttcaacaattcttggaacgaggtttggttcaagtatgatattgggatcacaaa 27513887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 17970426 - 17970328
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||||| |||||||| ||||| || |||||||| ||  |||||| ||||| |||||| || | |||||||||| ||||  | |||||||||||    
T  17970426 gaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaagtatgacgtagggatcacaaa 17970328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 27424531 - 27424625
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| ||||||||||||||| | ||||| |||| |||| | | ||| |||||||| || |||||||||||| ||||||  || ||||||||    
T  27424531 ccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgatactggaatcacaaa 27424625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 27480024 - 27479930
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| |||||||||||| |||| | ||||||||||||  ||||||| | ||| || |||| |||||||||| ||||||  || ||||||||    
T  27480024 ccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgtttggttcaagtatgatacaggaatcacaaa 27479930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 27502824 - 27502882
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaa 161  Q
    |||||||| ||||| ||||||||||| |||||| ||||||| |||| ||||||||||||    
T  27502824 ccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaa 27502882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 27526129 - 27526223
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||| | |||||||||||| |||| | |||||||||||| |||||||| ||||| || || | |||||||||| ||||||  || ||||||||    
T  27526129 ccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttggaatgaggtttggttcaagtatgatacaggaatcacaaa 27526223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 27567378 - 27567297
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgata 184  Q
    |||||||| ||||||||||| ||||| ||||| || | |||| | |  || |||||||||||||||||||||||| ||||||    
T  27567378 ccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaagtatgata 27567297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 27414321 - 27414415
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| ||||||||||||||||| ||||| || | |||| | |  || |||||||| || |||||||||||| ||||||  || ||||||||    
T  27414321 ccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagtatgatacaggaatcacaaa 27414415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 27469583 - 27469489
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| ||||| |||||| |||| | ||| |||||||| |||||||  ||||| || |||| ||| |||||  ||||||| |||||||||||    
T  27469583 ccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatgatgtttgcttcaaatatgatatagggatcacaaa 27469489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 27505719 - 27505813
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||| ||||| |||||| |||| | ||||||||||||  ||||||| ||||| || || | |||||||||| ||||||  || ||||||||    
T  27505719 ccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgaggtttggttcaagtatgatacaggaatcacaaa 27505813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 27500354 - 27500451
Alignment:
Q  102 gccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaatc 199  Q
    ||||||||| ||||| |||||||| |||| ||| |||| ||| |||| ||| ||||| || ||   |||||| ||| ||||||| |||||||||||||    
T  27500354 gccacccattggatggtcatatccgaactgttcttcagattggctcagcaattcttggaatgaactttggtttaagtatgatatagggatcacaaatc 27500451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 27516629 - 27516722
Alignment:
Q  106 cccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaatc 199  Q
    ||||| ||||| |||||| |||| | ||||||||||||  ||||||| ||||| || |||  ||| |||||  ||||||| |||||||||||||    
T  27516629 cccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatc 27516722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 27460601 - 27460505
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaatc 199  Q
    |||||||| |||||||||||| |||| | |||||||  ||| |||| ||| ||||| || |||  ||| |||||  ||||||| |||||||||||||    
T  27460601 ccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatc 27460505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 27474015 - 27473919
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaatc 199  Q
    |||||||| |||||||||||| |||| | |||||||  ||| |||| ||| ||||| || |||  ||| |||||  ||||||| |||||||||||||    
T  27474015 ccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatc 27473919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 27556396 - 27556492
Alignment:
Q  103 ccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaatc 199  Q
    |||||||| | ||||||||||||||| ||||| || ||||||   |  || |||||||| || |||||||||||  |||| ||||| ||||||||||    
T  27556396 ccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggttggttcaataatgaaatgggaatcacaaatc 27556492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 1756770 - 1756868
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||    
T  1756770 gaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatattgggatcacaaa 1756868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 1754815 - 1754719
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcaca 195  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||| ||||||| |||||||||    
T  1754815 gaggccacccattggatgatcatatccaaactcttccgcagcttgactcaacaaggattgaaacgatggttgattcaagtatgatattgggatcaca 1754719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 38044030 - 38043932
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||| ||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||| | ||| |||||| |||| || |||||||||||    
T  38044030 gaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacatagggatcacaaa 38043932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 55084913 - 55084815
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||||| |||||||| |||||||| |||||||| ||  ||||||||||||||||||| ||||||||||||||| | || || |||||||||||    
T  55084913 gaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagtcttgaaatgatggttggttcaagtaagacatagggatcacaaa 55084815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 50911883 - 50911980
Alignment:
Q  100 aggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    ||||||||||| || |||||||||||||| |||||||| |||||||||||||||| |||||| || | |||||||||| ||||  |||||||||||||    
T  50911883 aggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagcttggttcaagtatgacttggggatcacaaa 50911980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 38024888 - 38024986
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||||| || |||||||||||||| |||||||| ||||||||||| |||| |||||| || | |||||||||| |||| |||||||| |||||    
T  38024888 gaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagtatgacatggggataacaaa 38024986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 38031340 - 38031438
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||||| || |||||||||||||| |||||||| ||||||||||| |||| |||||| || | |||||||||| |||| |||||||| |||||    
T  38031340 gaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagtatgacatggggataacaaa 38031438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 50910087 - 50909989
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||||| ||||||||||||||||| ||||||||  ||||| ||||||||| |||||| || | |||||||||| |||| |||||||| |||||    
T  50910087 gaggccacccattggatgatcatatccaaattcttcctccacttgattcaacaagttttgaaatgaagcttggttcaagtatgacatggggataacaaa 50909989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 38028779 - 38028879
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaat 198  Q
    |||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||| || |||||| || | |||||||||| ||||  ||||||| ||||||    
T  38028779 gaggccgcccattggatggtcatatccaaattcttcctcggcttgactcaacaggttttgaaatgaagcttggttcaagtatgacgtggggataacaaat 38028878  T
Q  199 c 199  Q
    |    
T  38028879 c 38028879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 48840725 - 48840824
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaat 198  Q
    |||||||||||| ||||||||||||||||| |||| |||  ||| |||||||||||||||||| || | |||||||||| |||  |||||||| ||||||    
T  48840725 gaggccacccattggatgatcatatccaaattctttctccactt-actcaacaagtcttgaaatgaggcttggttcaagtatggcatggggattacaaat 48840823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 50904805 - 50904883
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaag 177  Q
    |||||||||||| |||||||||||||| || || ||||| ||| ||||||||||||||||||| || | ||||||||||    
T  50904805 gaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagtcttgaaatgaagtttggttcaag 50904883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 38033805 - 38033890
Alignment:
Q  112 ggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    ||||| ||||||||||| |||||||| |||||||||||||||| |||||| || | |||||||||| ||||  ||||||| |||||    
T  38033805 ggatggtcatatccaaattcttcctcggcttgactcaacaagttttgaaatgaagcttggttcaagtatgacgtggggataacaaa 38033890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 38040094 - 38040194
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaat 198  Q
    |||||| ||||| ||||| |||||||| || |||||||| ||||||||||||| || |||||| || | |||||||||| ||||  ||||||| ||||||    
T  38040094 gaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaggttttgaaatgaagcttggttcaagtatgacgtggggataacaaat 38040193  T
Q  199 c 199  Q
    |    
T  38040194 c 38040194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 38036806 - 38036897
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatgggga 190  Q
    |||||| ||||| ||||| |||||||| || |||||||| |||||||||||||| | |||||| || | |||||||||| |||  |||||||    
T  38036806 gaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaattttgaaatgaagcttggttcaagtatggcatgggga 38036897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 21607309 - 21607407
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||||| || |||||||||||||| |||||||| ||||||||||| |||| |||||| || | | |||||||| |||| |||||||| |||||    
T  21607309 gaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagctcggttcaagtatgacatggggataacaaa 21607407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 21634656 - 21634605
Alignment:
Q  113 gatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacga 164  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  21634656 gatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacga 21634605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 21604767 - 21604867
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaat 198  Q
    |||||| ||||| ||||| |||||||| || ||||||||  |||||||||||| || |||||| || | |||||||||| ||||  ||||||| ||||||    
T  21604767 gaggccgcccattggatggtcatatcctaattcttcctcgtcttgactcaacatgttttgaaatgaagcttggttcaagtatgacgtggggataacaaat 21604866  T
Q  199 c 199  Q
    |    
T  21604867 c 21604867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 3073696 - 3073598
Alignment:
Q  99 gaggccacccatgggatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagcatgatatggggatcacaaa 197  Q
    |||||||||||| |||||||| ||||| || |||||||| ||  |||||| ||||| |||||| || | |||||||||| ||||  | |||||||||||    
T  3073696 gaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaagtatgacgtagggatcacaaa 3073598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University